Skip to main content
Download PDF

Impact of ITPA gene polymorphism for predicting anemia and treatment outcome in HCV infected patients taking Sofosbuvir Ribavirin therapy

BMC Infectious Diseases volume 24, Article number: 301 (2024) Cite this article

Abstract

Background

Globally, 80 million people are suffering from chronic Hepatitis C virus (HCV) infection. Sofosbuvir ribavirin-based anti-HCV therapy is associated with anemia and other adverse effects. Polymorphisms of Inosine triphosphatase (ITPA) gene may cause functional impairment in the Inosine triphosphate pyrophosphatase enzyme, resulting in enhanced sustained viral response (SVR) and protection from ribavirin-associated anemia in patients on therapy. The study objective was to investigate the effect of Inosine triphosphatase gene polymorphism on SVR achievement, hemoglobin decline and ribavirin dose reduction in patients on therapy.

Methods

This prospective cohort study was of 170 hepatitis C infected patients received 6-month sofosbuvir ribavirin therapy. Patient viral load, reduction in ribavirin amount, liver function test, and complete blood count were noted monthly. Inosine triphosphatase variants rs1127354 and rs7270101 were assessed through the restriction fragment length polymorphism and confirmed using Sanger sequencing. The impact of polymorphism on cumulative reduction of ribavirin, and anti-HCV therapy outcome were studied.

Results

A total of 74.3% of patients had ITPA rs1127354 CC genotype, 25.7% were CA and AA 0%. The frequency of ITPA genotype rs7270101-AA was 95%, AC 5%, and CC was 0%. ITPA rs1127354-CA had a notably positive impact on SVR achievement with a zero-relapse rate. ITPA rs1127354-CA genotype was significantly (P ˂0.05) protective against ≥ 2 g/dl Hb reduction from baseline to 1st, 2nd and 6th months of therapy. During treatment, Hb reduction ≥ 10 g/dl was frequently observed in rs1127354-CC genotype and rs7270101-AA genotype patients. Ribavirin dose reduction was significantly (P ˂0.05) high in rs1127354-CC genotype as compared to genotype CA whereas no significant difference was observed in ribavirin dose reduction in rs7270101 AA and non-AA genotype. Patient baseline characteristics such as age, body mass index, rs1127354-CC genotype, and baseline Hb were significantly associated with significant Hb reduction.

Conclusion

Pretreatment evaluation of ITPA polymorphism can be a diagnostic tool to find out patients at risk of anemia and improve treatment adherence. ITPA genotype rs1127354-CA contributes to improved compliance with ribavirin dose and protects against hemoglobin decline in HCV patients while taking ribavirin-based therapy. However, ITPA rs1127354, rs7270101 polymorphism have no significant impact on SVR achievement.

Peer Review reports

Background

HCV is an important cause of liver-related morbidities and patient death. Pakistan ranks 2nd among countries with approximately 11 million HCV reported cases with day-by-day increasing burden. Around 6% of the Pakistani population is HCV-infected. HCV genotype-3 is the most prevalent in Pakistan followed by HCV genotypes 1 and 2 [1, 2]. In the past, primarily interferon ribavirin combination antiviral regimens were effectively in use against HCV in Pakistan. They were reported as having good therapy outcomes but a great number of HCV-infected patients do not achieve sustained viral response (SVR) and also experience severe adverse effects [3]. Particularly ribavirin is reported to cause hemolytic anemia. Ribavirin-induced hemolytic anemia is the cause of ribavirin dose reduction and therapy discontinuation in 10–20% of patients which is also reported to impact antiviral therapy outcomes. The continuous advancement in the discovery of antiviral agents targeting various stages of HCV life cycle is leading towards effective interferon free direct acting antiviral (DAA) therapy [4,5,6]. The arrival of DAA along with ribavirin against HCV infection resulted over 90–95% SVR rates along with lesser side effects [4, 7].

Treatment of chronic HCV infection has also shown significant challenges including intolerance to standard therapies and low viral clearance. Identifying the factors that can contribute to adverse therapy outcomes and finding those individuals who are likely to get the benefit of treatment have been under study for a long time [8]. Recently, Nonstructural protein 5B (NS5B) inhibitor Sofosbuvir has been permitted at a discounted price for Pakistan; it is currently in effective use and exhibited good SVR rates. Sofosbuvir combination with ribavirin is used solo or combined with interferon for the treatment of different HCV genotypes [9]. Hemolysis is the most significant ribavirin dose-dependent adverse event. Host genetic factors can help in the prediction and modification of therapy, especially concerning the duration and possible benefit of the addition of ribavirin [10]. In HCV patients several ITPA gene single nucleotide polymorphisms (SNPs) have been reported to predict anemia while on therapy [11, 12].

The inosine triphosphate pyrophosphatase (ITPase) enzyme is encoded by ITPA gene, this ITPase enzyme is involved in purine metabolism. This ITPase enzyme converts inosine triphosphate (ITP) to inosine monophosphate (IMP) and other potential substrates including xanthosine triphosphate (XTP) and deoxyinosine triphosphate (dITP). The ITPase is crucial to avoid intracellular buildup of rogue nucleotides ITP, dITP, and XTP which otherwise might be misleadingly incorporated into DNA and RNA producing genetic instability [13]. ITPase enzyme hydrolyzes ITP to IDP and IMP therefore, low levels of ITPase would lead to a relative abundance of ITP. Inside RBCs, ribavirin causes decreased Na/K transmembrane pump activity, membrane instability, and hemolysis by lowering ATP levels. The increased ITPA amount would help in restoring ATP levels as a substitute in place of ATP, in case of levels depleted by ribavirin, and protect from ribavirin-induced hemolytic anemia. The clinical utility of assessing ITPA genes includes identifying those individuals who are at the greatest risk of developing anemia, will help the patients to receive planned ribavirin dose with minimum side effects and identifying those who might tolerate a higher dose of ribavirin during treatment [8, 13,14,15].

Studies on individuals of European, African, and Japanese population has shown an association between ITPA variants with ribavirin-induced anemia [14]. Rembeck in 2015 reported significant associations between the likelihood of achieving HCV clearance and reduced ITPase enzyme [10]. In an Italian study, HCV-infected patients with reduced ITPase activity presented better SVR rates when treated with pegylated interferon and ribavirin. This association was also reported in HCV genotype-1 infected Japanese patients [16]. Study from Japan found that ITPA rs1127354 polymorphism was associated with ribavirin-related Hb decline, but no significant impact of ITPA polymorphism was found on SVR achievement rate [17]. A genome-wide association study also exhibited a strong association between ITPA polymorphisms and ribavirin-induced hemolytic anemia [11]. Two ITPA SNPs rs1127354 and rs7270101 reported a protective role against anemia due to ribavirin in HCV patients on therapy but were not associated with antiviral therapy outcomes [18,19,20]. Ribavirin is used as a supportive anti-HCV drug to reduce treatment duration, increase treatment outcome although produce adverse effects mainly ribavirin associated anemia. Determination of ITPA gene variants is a good predictive strategy of ribavirin-induced anemia, thus genotyping before starting antiviral treatment can work as a biomarker and play a prognostic role in clinical practice for pretreatment screening, therapy individualization, improving treatment outcome and reduction of ribavirin-associated Hb decline [15].

This study is intended to find out the impact of ITPA genetic polymorphisms on treatment outcomes in HCV-infected patients as a prognostic factor in improved management of patients. Pretreatment determination of ITPA polymorphism will help in early identification of anemia predisposition and its associated complications, which may have various implications for HCV affected individuals. The literature lacks studies of Pakistani population exploring the effect of ITPA polymorphism as a predicting factor for anemia development in HCV patients taking sofosbuvir ribavirin combination therapy. ITPA gene testing may work as a pharmacogenetic diagnostic tool to predict drug-induced adverse events, particularly for high-risk patients.

Methods

Study design and patient selection

This prospective cohort study was conducted in 2020 at the regional hepatitis center in Lahore after taking ethical approval reference number (UOLFAHS/565). A total of 170 HCV patients were assessed after taking ethical approval and consent was taken to participate. Patients with an age range of 18–60 years infected with HCV genotype 3a, of both genders, and who were new to treatment (no history of previous treatment for HCV) were included. The patients below 18 years of age, pregnant females, patients with a previous history of HCV treatment, patients found with co-infection of hepatitis B virus, Human immune deficiency virus, patients with liver cirrhosis, leukemia, alcoholics, and other comorbidities were excluded from this study. The patients were enrolled to be treated with sofosbuvir nucleoside analog inhibitor of HCV NS5B polymerase 400 mg once daily and weight-based ribavirin (for ˂75Kg weight 100 mg/day and > 75Kg body weight 1200 mg/day) for 6-months. Written informed consent to participate was taken. After obtaining approval from the ethical committee the HCV patients receiving DAA therapy were invited to participate and demographic data was also recorded.

Efficacy assessments

At baseline (before receiving DAA therapy), liver ultrasound was performed. Patients were screened by enzyme-linked immunosorbent assay (ELISA) for hepatitis B virus, Human immune deficiency virus, and hepatitis C virus. Tests including Hepatitis C viral load (Real-time PCR), liver function tests, and complete blood count (CBC), were performed monthly (1–6 months).

Study endpoints

For viral end points patients with an undetectable virus at the end of treatment were described to have achieved a CVR complete viral response. Relapse was defined as patients after achieving CVR successfully presented detectable HCV RNA during after-treatment follow-up. Only patients with the undetectable viral RNA at CVR and at follow-up 24 weeks after completion of treatment were considered to have achieved SVR (Sustained viral response). The rate of SVR achievement was recorded as Per protocol analysis (PPA) means those patients were included in the study who adhered to anti-viral therapy till the finishing point and their post-treatment SVR status was assessed [21]. A decline in hemoglobin levels in HCV patients after using DAA (sofosbuvir ribavirin) treatment was also noted [5].

Determination of ITPA polymorphism

EDTA anticoagulated blood was collected aseptically and was used for DNA extraction following the technique described previously [22]. ITPA gene amplification was performed with conventional PCR using (Thermo Scientific by Thermo Fisher) PCR master with 5–10 ng/µl DNA. Forward primer F-5′‐AGATGGGCAGCAGAGTTATCG‐3′ and the reverse primer was R‐5′‐AGACAGAGAAATCCAACCATCTTTTAAGAA 3′ [21]. The thermal cycle conditions were as described in our previous study [23].

Following PCR, the ITPA genotypes were initially analyzed using RFLP (Restriction fragment length polymorphism). For RFLP, PCR products 213 bp were treated overnight with restriction enzymes Xcel and Mboll to investigate rs1127354 and rs7270101 variants polymorphisms respectively [21]. The ITPA genotype results were confirmed through Sanger sequencing and results were analyzed by Chromas version 2.5.0.

Statistical analysis

Based on the patient’s ITPA genotype a comparative analysis of data was performed. Shapiro-Wilk test was used to test the normality of data. Quantitative variables were described as mean ± SD and qualitative variables were reported as frequencies and percentages. Categorical and continuous variables were compared by the Chi-square test (X2) and Mann-Whitney U test respectively. Kaplan-Meier analysis and the log-rank test were used to estimate and compare ribavirin dose reductions between the ITPA genotypes. To identify variables associated with Hb reduction ≤ 2 g/dl during treatment Binary logistic regression analysis was used. All tests were two-tailed and performed using the SPSS software version 25.0 and P ≤0.05 was considered statistically significant.

Results

One fifty out of a total of 170 patients completed 6-month antiviral therapy and were effectively tracked till CVR. Out of which 140 HCV patients remain successfully associated with the study for a further 6 months till SVR. In the case of ITPA rs1127354 polymorphism homozygous (CC) and heterozygous (CA) allele fragments of 213 bp and 213, 135,78 bp were observed. While in case of ITPA polymorphism rs7170101(AA) allele, and (AC) allele fragments of 213 bp and 213, 173, 40 bp were observed respectively. No homozygous recessive alleles (rs1127354-AA and rs7170101-CC) were found in our study samples. Both ITPA variants rs1127354 and rs7270101 data obeyed the Hardy-Weinberg equilibrium. RFLP results were further confirmed using Sanger sequencing. The sequencing chromatogram of ITPA polymorphism is presented in Fig. 1.

Fig. 1
figure 1

Sequencing chromatogram of ITPA polymorphism rs1127354 and rs7170101. (A) Chromatogram of rs1127354-CC genotype. (B) Chromatogram of rs1127354-CA genotype (Missense mutation). Arrow indicates the point where the mutation occurred. (C): Chromatogram of rs7270101-AA genotype. (D) Chromatogram of rs7070101-AC genotype (Splice variant). Arrow indicates the point where the mutation occurred, A, T, G, and C present nucleotide positions as adenine, guanine, cytosine, and thiamine

Full size image

ITPA SNPs and treatment outcome with Sofosbuvir Ribavirin therapy

Overall, CVR was achieved by 99.3% of HCV patients. Out of 140 patients, 93.6% of patients achieved SVR. An important finding was that 100% of individuals having ITPA rs1127354-CA genotype achieve SVR. Anti-HCV treatment outcome on the basis of the patient’s ITPA SNP rs1127354 and rs7270101 genotypes is presented in Fig. 2.

Fig. 2
figure 2

ITPA rs1127354, rs7270101 genotype wise presentation of SVR achievers and relapsed HCV patients receiving Sofosbuvir ribavirin. Sustained Viral response (SVR)

Full size image

The CVR achievement rate was similar between both ITPA genotypes rs1127354 and rs7270101. No significant difference was observed between the baseline features of both group patients presented in Table 1. Table 2 presents the demographic profile of HCV patients taking sofosbuvir ribavirin therapy and whether they achieve SVR or relapsed.

Table 1 Demographic profile of HCV patients (ITPA rs1127354-CC and Non-CC genotype)
Full size table
Table 2 Demographic characteristics of patients who achieve SVR and patients who relapsed
Full size table

ITPA genotype and liver ultrasound

A total of 28 (41%) patients had fatty liver whereas normal liver architecture was found in 50% of patients. There was no significant difference between the liver architecture of patients based on patient gender and ITPA rs1127354 genotype.

ITPA SNP and reduction in Hb concentration

When pretreatment Hb levels were compared to 1 month post treatment Hb levels, 89 (59.3%) HCV-infected patients showed ˃2 g/dl Hb reduction, but only 61 (40.7%) persons showed ˂ 2 g/dl Hb reduction. Significant Hb reduction as compared to baseline Hb was found in ITPA rs1127354 CC and CA genotypes but this difference was not significant in ITPA rs7270101 genotypes Fig. 3.

Fig. 3
figure 3

Hb reduction ≥ 2 g/dl from baseline to 1st month according to ITPA polymorphism. The height of bars presents the number of HCV infected patients with belong to each ITPA genotype experience hemoglobin reduction after weight-based ribavirin (for ˂75Kg weight 100 mg/day and > 75Kg body weight 1200 mg/day) was given

Full size image

Patients on DAA therapy were observed monthly for Hb reduction ≥ 2 g/dl. Significantly high (P = 0.05, P = 0.01, P = 0.039) number of ITPA SNP rs1127354-CC patients experience ≥ 2 g/dl Hb reduction at months 1,2, and 4 during 6-month sofosbuvir ribavirin therapy with reference to baseline Hb levels as compared to rs1127354-CA (Fig. 4).

Fig. 4
figure 4

Month wise ≥ 2 g/dl Hb reduction with reference of ITPA rs11273547 CC and CA genotype. Months are presented as M1, M2, M3, M4, M5, M6. The bars present percentage of patients with each ITPA genotype experience hemoglobin reduction. Significantly high number of patients with ITPA SNP rs1127354-CC experience ≥ 2 g/dl Hb reduction at months M1, M2, and M4 mentioned by P value

Full size image

Reduction in Hb less than ≤10 g/dl was found in 35 (23.3%) HCV patients during DAA therapy. Out of which 29 (26.1%) belong to the ITPA rs1127354-CC group and 6 (15.4%) belong to the CA group. Whereas 22(15.5%) of patients with ITPA rs7270101 AA genotype had Hb less than 10 g/dl and only 1 (12.5%) patient with rs7270101 AC had Hb less than 10 g/dl.

The mean difference in Hb concentration

The mean Hb concentration of HCV patients at baseline was 13.2 ± 1.2. Month-wise difference of means of Hb concentration as compared to baseline Hb was calculated. A significant reduction in Hb concentration in the 1st month of antiviral therapy was observed with reference to baseline Hb concentration Fig. 5A. The mean difference of Hb concentration when plotted on the basis of ITPA SNP, reduction in Hb concentration was observed from baseline was high in the ITPA rs117354-CC genotype as compared to CA Fig. 5B.

Fig. 5
figure 5

Changes in mean hemoglobin concentration of HCV infected patients during Sofosbuvir and Ribavirin treatment. (A) Changes in mean Hb concentration of overall patients. (B) Changes in mean Hb concentration with reference of ITPA rs1127354 CC and CA. Base line (BL), Month of treatment (M1, M2, M3, M4, M5, M6)

Full size image

Ribavirin dose reduction and ITPA-SNPs

Ribavirin doses were reduced in response to Hb decline, ribavirin amounts were reduced in total to 64 (42.7%) doses relative to the planned ribavirin dose as necessary according to treatment guidelines. Ribavirin dose reduction was frequently higher in ITPA rs1127354-CC individuals. However no significant difference was observed in ribavirin dose reduction in ITPA rs7270101 AA and Non-AA genotype Fig. 6.

Fig. 6
figure 6

Ribavirin dose reduction relative to ITPA polymorphism in HCV patients taking Sofosbuvir ribavirin therapy. The bars present number of patients experience ribavirin dose reduction by ITPA polymorphism rs1127354 CC and CA genotype and ITPA rs7270101 AA and Ac genotype

Full size image

Survival analysis of data presented that there was a significant difference P ≤0.05 between month-wise ribavirin dose reduction in ITPA rs1127354-CA and CC genotype. Contrary to this no significant difference was observed in month-wise ribavirin dose reduction ITPA rs7270101 genotype AA and AC Fig. 7.

Fig. 7
figure 7

Ribavirin dose reduction on basis of ITPA genotype (Kaplan-mere curve). (A) Ribavirin reduction in rs1127354-CC & CA genotype. (B) Ribavirin dose reduction in ITPA rs7270101 AA and AC genotype

Full size image

Prognostic factors linked with ≥ 2 g/dl Hb reduction with respect to baseline Hb value

To determine prognostic factors linked with ≥ 2 g/dl Hb reduction with respect to baseline Hb. Binomial logistic regression analysis was used. The (Nagelkerke R2) was 31.9%. It was observed that HCV patient age, body mass index, baseline Hb, and patients’ ITPA genotype rs1127354-CC were significantly (P-value < 0.05) associated with a reduction of ≥ 2 g/dl Hb level as compared to baseline Hb value (Table 3).

Table 3 Pretreatment characteristics of HCV patients associated with Hb reduction ≥ 2 g/dl compared to pretreatment Hb value
Full size table

Reduction in Hb concentration due to Ribavirin-based therapy and impact on SVR achievement

Out of all 9 patients who not achieve SVR analysis of data presented that most of the patients (6 out of 9) had Hb reduction > 2 g/dl Hb when 1 month post treatment Hb levels were compared to pretreatment Hb levels but the difference was not significant (P = 0.09). Moreover, no significant difference was observed P = 0.53 between the incidence of anemia throughout the treatment in patients who achieve SVR and those who relapsed.

Baseline prognostic factors of HCV patient linked with SVR achievement

To determine the baseline prognostic factors linked with SVR achievement (antiviral response) binomial logistic regression analysis was used. The result of analysis presented (Nagelkerke R2) was 28.7% but none of the baseline variable was found significantly associated with SVR achievement or relapse in our under-study population (Table 4).

Table 4 Pretreatment characteristics of HCV patients associated with SVR achievement
Full size table

Discussion

The recent development of DAAs for the treatment of HCV patients helped to achieve high SVR rates and improved patient safety. DAA in combination with ribavirin is reported to cause anemia which could restrict therapy. Several reasons, including patient ITPA genotype, have been reported to be significantly associated with ribavirin-induced anemia during treatment [24]. Literature observed with studies lacks in exploring the effects of DAA with ribavirin on Hb reduction levels, concerning ITPA polymorphisms from the Pakistani population. The current study found that 74.3% of HCV patients were having ITPA rs1127354 CC genotype and the frequency of ITPA heterozygous allele rs1127354-CA was 25%, while 95% of patients had rs7270101-AA genotype frequency and rs7270101 genotype-AC was only 5%. The findings of the present study are similar to the study from Japan reported frequency of rs1127354 CC genotype was 75% and 25% had a non-CC % [25]. An Italian study stated that ITPA genotypes at rs1127354 were 90% CC, 8% CA, and 1.2% AA. Whereas ITPA rs7270101 genotypes were 78% AA, 19.3% AC, and 1.6% CC [26]. Kim et al. conducted a study in Korea and found that 81% of patients had genotype rs1127354-CC and 18% were non-CC [27]. The study from Peshawar Pakistan reported that ITPA rs1127354 CC genotype was 60% and 33% were genotype CA, and only 2.6% of HCV patients had AA genotype. While all patients presented ITPA rs7270101-AA genotype [28]. Contrary to our study from Iran found the genotypic frequency of ITPA rs1127354 was 79% CC, 20% CA, and 1% AA and ITPA rs7270101 was 80% AA, 19% AC and 1% CC [21].

Japanese studies reported a correlation of ribavirin associated anemia incidence and ITPA SNP rs1127354 polymorphism and ribavirin dose reduction but was not linked to antiviral therapy outcome and no polymorphism of gene at ITPA SNP rs7270101was observed. Pretreatment characteristics including patient age, baseline hemoglobin, and ITPA rs1127354-CC genotype were independently associated with the development of anemia [5, 12]. In HCV patients a real-world study on Caucasian patients showed that ITPase deficiency was associated with protection from anemia in HCV patients having pegylated interferon and ribavirin treatment. ITPase deficiency would help in ribavirin dose reduction to a lesser extent and also support to use of less supportive agents such as blood transfusions and erythropoietin against anemia as treatment efficacy is reported to be hampered by dose reductions [14]. In the present study ITPA, heterozygous allele rs1127354-CA has been found to protect significantly against Hb reduction. In HCV patients the reduction of hemoglobin ≥ 10 g/dl was frequently observed in ITPA wild (rs1127354-CC) genotypes. Hb reduction ≥ 2 g/dl with respect to pretherapy Hb level was significantly associated with variables like age of the patient, BMI, having rs1127354-CC, and baseline Hb level. Overall good 93% rates of SVR with sofosbuvir ribavirin combination therapy were observed, and notably, no patient with ITPA genotype rs1127354-CA presented as relapsed after achieving SVR. However, there was no significant impact of the ITPA genotype of the patient on SVR achievement. Similar findings of a study from Islamabad (Pakistan) SVR rate was 96% [29], and a study from Peshawar (Pakistan) reported age was a key factor in achieving SVR in HCV subjects [30]. Thompson et al. described that ITPA rs7270101 & rs1127354 variants were linked with anemia due to ribavirin. Minor alleles of both polymorphisms rs1127354 & rs7270101 were protective against anemia but presented any positive impact on SVR rate improvement [26]. Kim et al. reported from Korea that ITPA non-CC genotypes at rs1127354 are associated with protection against anemia due to ribavirin during ribavirin & interferon treatment in HCV-infected individuals. However, no association was found with SVR rate improvement [27]. Urabe et al. reported that ITPA CC genotype HCV-infected patients frequently experienced anemia as compared to ITPA CA/AA genotype individuals [31].

In a study from Egypt conducted on chronic HCV receiving pegylated-interferon & ribavirin treatment and ITPA rs1127354-CC genotype was linked with hemoglobin reduction at 1st month of therapy. Other factors such as female gender and lower baseline Hb were associated with anemia at week 4 of treatment. ITPA genotype-CC patients experienced hemoglobin reduction in response to which ribavirin dose was reduced more frequently. There was no impact of ITPA polymorphism on SVR achievement [32]. A study conducted in Peshawar Pakistan also reported that ITPA rs1127354 minor allele-A is protective against ribavirin-induced anemia during interferon ribavirin anti-HCV treatment [28]. Another study from Karachi Pakistan reported around 16.0% of on-therapy patients had a ribavirin dose reduction due to adverse effects of anemia. A total of 59.4% developed anemia, and 23.6% had severe anemia. The severity of anemia was related to the patient’s age and baseline hemoglobin levels [33].

In the current study ribavirin dose reduction in response to adverse effects was more prominent in HCV-infected patients with ITPA rs1127354-CC genotype but not in CA genotype whereas this difference was not observed in ITPA SNP rs7270101 because only 5% of patients were showing polymorphism in the study population. Likewise, Nemr et al. reported that ITPA rs1127354 polymorphism was associated with ribavirin-based Hb reduction in Egyptian patients receiving anti-HCV treatment. Hemoglobin decline and ribavirin dose reduction were higher among ITPA rs1127354 CC individuals [34]. Azakami et al. studied the effect of ITPA variants on therapy response. A rapid reduction in Hb levels was observed in rs1127354-CC genotyped individuals and comparatively slow Hb reduction was observed in non-CC patients. Cumulative ribavirin dose reduction was also higher in rs1127354-CC than non-CC individuals but no influence of ITPA variants was observed on treatment outcome [35]. On another hand, Hwang et al. reported that ITPA rs7270101 and rs1127354 are protective against ribavirin-associated anemia in HCV patients on therapy but have no influence on therapy outcome. In the Asian population, ITPA rs7270101 is excluded because no such variants have been reported in the international HapMap project database [36].

Conflict

ing this, a conclusion statement of meta-analysis of 2020 found patients with ITPA rs1127354-CC polymorphism are more likely to be involved in the development of hemolytic anemia and decreased rate of SVR. Literature learned from a few studies discussed the effect of rs7170101 polymorphism. They also found statistical evidence of an association between ribavirin dose reduction and ITPA polymorphism [4]. A real-life study was conducted on HCV genotype 2 patients, and it was observed that regardless of previous antiviral treatment history sofosbuvir-based treatment schedules were associated with good tolerability and SVR achievement rates, without a significant impact, on treatment ribavirin dose reductions [37]. The results of present study determine that ribavirin based DAA therapy has good SVR achievement rate in our population and pretreatment evaluation of ITPA polymorphism can help to reduce the risk of developing anemia due to ribavirin. The study’s drawback was that more attention may have been paid to additional variables or confounders that might have an impact on the findings. Nevertheless, the number of patients who completed the study was modest that may affect the precision of our estimates and the ability to generalize our findings to the broader population, but then again, the insights gained from present study provide valuable information on the risk factors associated with anemia in the context of HCV infection in the Pakistani population. These findings can serve as a foundation for larger-scale studies in our population in the future.

Conclusion

The current study concludes that sofosbuvir ribavirin therapy provides good SVR rates achievement in HCV but is associated with the risk of certain adverse effects, notably ribavirin-associated anemia. We found patients with ITPA genotype rs1127354-CC are significantly at higher risk of developing ribavirin-associated anemia as compared to patients with a non-CC genotype that leads to less adherence to ribavirin dose but no statistically significant impact of ITPA genotype has been found on SVR achievement. These findings highlight the importance of pretreatment genotype evaluation of ITPA which can be used as a pharmacogenetic diagnostic tool in clinical practice to find out risky patients and individuals who can benefit from ribavirin. It will also help in individualization and management of ribavirin dose to get maximum benefit. The study limitation was that a very small number of rs7270101 heterozygous allele patients were found which makes it difficult to monitor its effect on Hb reduction and treatment outcome. We acknowledge that larger studies to further explore the impact of ITPA polymorphism on ribavirin based anti-HCV therapy tolerability and treatment outcome are warranted to confirm and extend our observations.

Data availability

All data is available with the corresponding author and can be accessed on request. The datasets generated and/or analyzed during the current study are available on the Figshare with citation Amjed, Sameen (2023). ITPA SNP data.xlsx. figshare. Dataset. https://doi.org/10.6084/m9.figshare.24847809.v3.

Abbreviations

ITPA:

Inosine triphosphatase

HCV:

Hepatitis C virus

CVR:

complete viral response

SVR:

sustained viral response

DAA:

Direct acting antiviral

SNP:

Single nucleotide polymorphisms

IMP:

Inosine monophosphate

XTP:

Xanthosine triphosphate

dITP:

Deoxyinosine triphosphate

CBC:

Complete blood count

RFLP:

Restriction fragment length polymorphism

References

  1. Afzal MS. Hepatitis C virus and interferon-free antiviral therapeutics revolution: implications for Pakistan. Viral Immunol. 2017;30(4):252–7.

    Article  CAS  PubMed  Google Scholar 

  2. Jafar J, Junaid K, Saleem K, Amjed S, Arshad F, Amjed T, Raja N, Gillani A. Hypovitaminosis D in Hepatitis C patients and its relation with demographic and laboratory data. JPMA 2019.

  3. van der Meer AJ, Wedemeyer H, Feld JJ, Hansen BE, Manns MP, Zeuzem S, Janssen HL. Is there sufficient evidence to recommend antiviral therapy in hepatitis C? J Hepatol. 2014;60(1):191–6.

    Article  PubMed  Google Scholar 

  4. Ma Z, Sun Y, Du P, Li X. Association between inosine triphosphatase rs1127354 polymorphisms and Ribavirin-induced anaemia and outcome in hepatitis C virus‐infected patients: a meta‐analysis. J Clin Pharm Ther. 2020;45(6):1218–27.

    Article  CAS  PubMed  Google Scholar 

  5. Kozuka R, Hai H, Teranishi Y, Motoyama H, Kawamura E, Hagihara A, Uchida-Kobayashi S, Morikawa H, Enomoto M, Murakami Y. ITPA polymorphism correlates with the reductions in hemoglobin concentration and Ribavirin dose during sofosbuvir and Ribavirin therapy. J Gastroenterol Hepatol 2017.

  6. Manns MP, Buti M, Gane E, Pawlotsky J-M, Razavi H, Terrault N, Younossi Z. Hepatitis C virus infection. Nat Reviews Disease Primers. 2017;3(1):1–19.

    Google Scholar 

  7. Simmons B, Saleem J, Heath K, Cooke GS, Hill A. Long-term treatment outcomes of patients infected with hepatitis C virus: a systematic review and meta-analysis of the survival benefit of achieving a sustained virological response. Clin Infect Dis. 2015;61(5):730–40.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Schaefer EA, Chung RT. The impact of human gene polymorphisms on HCV infection and disease outcome. Seminars in liver disease: 2011. © Thieme Medical; 2011. pp. 375–86.

  9. Bagley KC, Schwartz JA, Andersen H, Eldridge JH, Xu R, Ota-Setlik A, Geltz JJ, Halford WP, Fouts TR. An interleukin 12 adjuvanted herpes simplex virus 2 DNA vaccine is more protective than a glycoprotein D subunit vaccine in a high-dose murine challenge model. Viral Immunol. 2017;30(3):178–95.

    Article  CAS  PubMed  Google Scholar 

  10. Rembeck K, Lagging M. Impact of IL28B, ITPA and PNPLA3 genetic variants on therapeutic outcome and progression of hepatitis C virus infection. Pharmacogenomics. 2015;16(10):1179–88.

    Article  CAS  PubMed  Google Scholar 

  11. Fellay J, Thompson AJ, Ge D, Gumbs CE, Urban TJ, Shianna KV, Little LD, Qiu P, Bertelsen AH, Watson M. ITPA gene variants protect against anaemia in patients treated for chronic hepatitis C. Nature. 2010;464(7287):405–8.

    Article  ADS  CAS  PubMed  Google Scholar 

  12. Ochi H, Maekawa T, Abe H, Hayashida Y, Nakano R, Kubo M, Tsunoda T, Hayes CN, Kumada H, Nakamura Y. ITPA polymorphism affects Ribavirin-induced anemia and outcomes of therapy—a genome-wide study of Japanese HCV virus patients. Gastroenterology. 2010;139(4):1190–7. e1193.

    Article  CAS  PubMed  Google Scholar 

  13. O’Brien TR, Yang H-I, Groover S, Jeng W-J. Genetic factors that affect spontaneous clearance of hepatitis C or B virus, response to treatment, and disease progression. Gastroenterology. 2019;156(2):400–17.

    Article  PubMed  Google Scholar 

  14. Maan R, van der Meer AJ, Brouwer WP, Plompen EP, Sonneveld MJ, Roomer R, van der Eijk AA, Groothuismink ZM, Hansen BE, Veldt BJ. ITPA polymorphisms are associated with hematological side effects during antiviral therapy for chronic HCV infection. PLoS ONE. 2015;10(10):e0139317.

    Article  PubMed  PubMed Central  Google Scholar 

  15. D’Avolio A, Cusato J, De Nicolò A, Allegra S, Di Perri G. Pharmacogenetics of Ribavirin-induced anemia in HCV patients. Pharmacogenomics. 2016;17(8):925–41.

    Article  PubMed  Google Scholar 

  16. Clark P, Aghemo A, Degasperi E, Galmozzi E, Urban T, Vock D, Patel K, Thompson A, Rumi M, D’Ambrosio R. Inosine triphosphatase deficiency helps predict anaemia, anaemia management and response in chronic hepatitis C therapy. J Viral Hepatitis. 2013;20(12):858–66.

    Article  CAS  Google Scholar 

  17. Ishida H, Sakane S, Toyama T, Fukutomi K, Kimura K, Sugimoto A, Hibino K, Tamura T, Iwasaki T, Iwasaki R. Administration of low-dose epoetin‐alpha facilitates adherence to Ribavirin in triple therapy with pegylated interferon‐alpha‐2b and telaprevir. Hepatol Res. 2014;44(10):E84–91.

    Article  CAS  PubMed  Google Scholar 

  18. Ogawa E, Furusyo N, Nakamuta M, Kajiwara E, Nomura H, Dohmen K, Takahashi K, Satoh T, Azuma K, Kawano A. Clinical milestones for the prediction of severe anemia by chronic hepatitis C patients receiving telaprevir-based triple therapy. J Hepatol. 2013;59(4):667–74.

    Article  CAS  PubMed  Google Scholar 

  19. Tahata Y, Hiramatsu N, Oze T, Urabe A, Morishita N, Yamada R, Yakushijin T, Hosui A, Oshita M, Kaneko A. Impact of Ribavirin dosage in chronic hepatitis C patients treated with simeprevir, pegylated interferon plus Ribavirin combination therapy. J Med Virol. 2016;88(10):1776–84.

    Article  CAS  PubMed  Google Scholar 

  20. Ampuero J, Del Campo JA, Rojas L, Calleja JL, Cabezas J, Lens S, Crespo J, Forns X, Andrade RJ, Fernández I. Role of ITPA and SLC28A2 genes in the prediction of anaemia associated with protease inhibitor plus Ribavirin and peginterferon in hepatitis C treatment. J Clin Virol. 2015;68:56–60.

    Article  CAS  PubMed  Google Scholar 

  21. Alavian SE, Sharafi H, Shirmast P, Alavian SM, Behnava B, Pouryasin M, Keshvari M, Pouryasin A. A facile PCR-RFLP method for genotyping of ITPA rs1127354 and rs7270101 polymorphisms. J Clin Lab Anal. 2018;32(7):e22440.

    Article  PubMed  PubMed Central  Google Scholar 

  22. Iranpur V, Esmailizadeh A, Horriat R. Rapid Extraction of High Quality DNA from Whole Blood Stored at 4∘ C for Long Period. Protocol online Retrieved from: http://www protocol-online org/prot/Protocols/Rapid-Extraction-of-High-Quality-DNA-from-Whole-Blood-Stored-at-4-C-for-Long-Period-4175 2010.

  23. Amjed S, Saleem HGM, Ullah S, Latif S, Irfan S, Jafar J, Waqar AB. Protective role of ITPA rs1127354-CA polymorphism against anemia in HCV patients using Sofosbuvir Ribavirin therapy: age and gender match case-control study. Advancements Life Sci. 2023;10(3):381–9.

    Google Scholar 

  24. Morio K, Imamura M, Kawakami Y, Morio R, Hatooka M, Kan H, Fujino H, Fukuhara T, Kobayashi T, Masaki K. Effects of ITPA polymorphism on decrease of hemoglobin during simeprevir, peg-interferon, and Ribavirin combination treatment for chronic hepatitis C. Hepatol Res. 2016;46(12):1256–63.

    Article  CAS  PubMed  Google Scholar 

  25. Morio K, Imamura M, Kawakami Y, Nakahara T, Nagaoki Y, Kawaoka T, Tsuge M, Hiramatsu A, Aikata H, Hayes CN. ITPA polymorphism effects on decrease of hemoglobin during sofosbuvir and Ribavirin combination treatment for chronic hepatitis C. J Gastroenterol. 2017;52(6):746–53.

    Article  CAS  PubMed  Google Scholar 

  26. Thompson AJ, Santoro R, Piazzolla V, Clark PJ, Naggie S, Tillmann HL, Patel K, Muir AJ, Shianna KV, Mottola L. Inosine triphosphatase genetic variants are protective against anemia during antiviral therapy for HCV2/3 but do not decrease dose reductions of RBV or increase SVR. Hepatology. 2011;53(2):389–95.

    Article  CAS  PubMed  Google Scholar 

  27. Kim JS, Ahn S-M, Jung YK, Kwon OS, Kim YS, Choi DJ, Kim JH. The impact of inosine triphosphatase variants on hemoglobin level and sustained virologic response of chronic hepatitis C in Korean. J Korean Med Sci. 2013;28(8):1213–9.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  28. Rahman IU, Siraj S, Aqeel M, Khan MTM, Hussain A. Association of Inosine Triphosphatase Polymorphysims rs7270101 and rs1127354 with the occurrence of Anemia in Hepatitis C patients receiving Pegylated Interferon and Ribavirin. Int J Pathol 2019:208–12.

  29. Ali I, Gul A, Sahar AN, Niaz S, Rahman S, Khan IA, Jamil J. RESPONSE RATE OF SOFOSBUVIR BASED ANTIVIRAL THERAPY AMONG PATIENTS INFECTED WITH HEPATITIS C VIRUS GENOTYPE 3A. J Med Sci. 2019;27(4):295–301.

    Google Scholar 

  30. Haider SA, Ahmad B, Ali S, Haider A, Bashir S, Mahmood N. Sofosbuvir and Ribavirin Combination Therapy response in various Hepatitis C virus genotypes in Peshawar, Khyber Pakhtunkhwa. Jundishapur J Microbiol 2020, 13(6).

  31. Urabe A, Sakamori R, Tahata Y, Yamada R, Imai Y, Hagiwara H, Tamura S, Fukui H, Yamada Y, Kaneko A. Predictive factors of anemia during sofosbuvir and Ribavirin therapy for genotype 2 chronic hepatitis C patients. Hepatol Res. 2019;49(8):853–9.

    Article  CAS  PubMed  Google Scholar 

  32. El Raziky M, Zayed NA, Abdel Baki A, Mansour SA, Shahin RM. ITPA gene polymorphism (94C > A) effects on Ribavirin-induced anemia during therapy in Egyptian patients with chronic hepatitis C. J Med Virol. 2017;89(10):1823–9.

    Article  PubMed  Google Scholar 

  33. Shaikh ZA, Shamim J, Nankani K, RIBAVIRIN INDUCED ANEMIA: A CROSS SECTIONAL STUDY AMONG PATIENTS WITH HEPATITIS C, VISITING OUT PATIENT DEPARTMENT OF A MAJOR PUBLIC SECTOR TERTIARY CARE HOSPITAL. KARACHI, PAKISTAN. Pakistan J Public Health. 2018;8(3):170–3.

    Article  Google Scholar 

  34. Nemr N, Kishk R, Mandour M. Role of ITPA gene polymorphism in Ribavirin-induced anemia and thrombocytopenia in Egyptian patients with chronic hepatitis C. Indian J Gastroenterol. 2016;35(1):7–13.

    Article  PubMed  Google Scholar 

  35. Azakami T, Hayes CN, Sezaki H, Kobayashi M, Akuta N, Suzuki F, Kumada H, Abe H, Miki D, Tsuge M. Common genetic polymorphism of ITPA gene affects Ribavirin-induced anemia and effect of peg‐interferon plus Ribavirin therapy. J Med Virol. 2011;83(6):1048–57.

    Article  CAS  PubMed  Google Scholar 

  36. Hwang J-J, Lo C-C, Lin C-H, Cheng H-S, Hung I-W, Tsai W-J, Hung C-H. Association between IPTA gene polymorphisms and hematological abnormalities in hepatitis C virus-infected patients receiving combination therapy. Gut Liver. 2015;9(2):214.

    Article  PubMed  Google Scholar 

  37. Smirne C, D’Avolio A, Bellan M, Gualerzi A, Crobu MG, Pirisi M. Sofosbuvir-based therapies in genotype 2 hepatitis C virus cirrhosis: a real‐life experience with focus on Ribavirin dose. Pharmacol Res Perspect. 2021;9(4):e00811.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Funding

This research did not receive any specific grant from funding agencies in the commercial, public, or not-for-profit sectors.

Author information

Authors and Affiliations

  1. University Institute of Medical Laboratory Technology, Faculty of Allied Health Sciences, The University of Lahore, Raiwind Road Campus, Lahore, Pakistan

    Sameen Amjed, Hafiz Ghulam Murtaza Saleem, Sajjad Ullah & Ahmad Bilal Waqar

  2. Medical Laboratory Technology Department, Faculty of Rehabilitation and Allied Health Sciences, RIPHAH International University, Gulberg Campus, Lahore, Pakistan

    Sameen Amjed & Hafiz Ghulam Murtaza Saleem

  3. Gastroenterology Department, Akthar Saeed Medical and Dental College, Lahore, Pakistan

    Shahzad Latif

  4. Department of Microbiology and Molecular Genetics, University of the Punjab, Lahore, Pakistan

    Shabana

  5. Specilized Health Care and Medical Education Department, Lahore, Punjab, Pakistan

    Junaid Jafar

Authors
  1. Sameen Amjed
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Hafiz Ghulam Murtaza Saleem
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. Sajjad Ullah
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. Shahzad Latif
    View author publications

    You can also search for this author in PubMed Google Scholar

  5. Shabana
    View author publications

    You can also search for this author in PubMed Google Scholar

  6. Junaid Jafar
    View author publications

    You can also search for this author in PubMed Google Scholar

  7. Ahmad Bilal Waqar
    View author publications

    You can also search for this author in PubMed Google Scholar

Contributions

SA, HGM, S and ABW originally designed this study, SA, JJ and SL helped in sampling, SA, S and JJ were involved in lab work, SA, HGM, SU, JJ, SL, S, and ABW did data analysis and drafted this manuscript.

Corresponding author

Correspondence to Sameen Amjed.

Ethics declarations

Ethics approval and consent to participate

The study was conducted after taking approval from Institutional review board of FRAHS, UIMLT department The University of Lahore, Pakistan.

Consent for publication

Not applicable.

Competing interests

The authors declare no competing interests.

Additional information

Publisher’s Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Amjed, S., Saleem, H.G.M., Ullah, S. et al. Impact of ITPA gene polymorphism for predicting anemia and treatment outcome in HCV infected patients taking Sofosbuvir Ribavirin therapy. BMC Infect Dis 24, 301 (2024). https://doi.org/10.1186/s12879-024-09188-1

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1186/s12879-024-09188-1

Keywords

BMC Infectious Diseases

ISSN: 1471-2334

Contact us