Crump JA, Mintz ED. Global trends in typhoid and paratyphoid fever. Clin Infect Dis. 2010;50(2):241–6.
Article
PubMed
PubMed Central
Google Scholar
Majowicz SE, Musto J, Scallan E, Angulo FJ, Kirk M, O'Brien SJ, Jones TF, Fazil A, Hoekstra RM. The global burden of nontyphoidal salmonella gastroenteritis. Clin Infect Dis. 2010;50(6):882–9.
Article
PubMed
Google Scholar
Ao TT, Feasey NA, Gordon MA, Keddy KH, Angulo FJ, Crump JA. Global burden of invasive nontyphoidal Salmonella disease, 2010(1). Emerg Infect Dis. 2015;21(6)
Gordon MA. Invasive nontyphoidal salmonella disease: epidemiology, pathogenesis and diagnosis. Curr Opin Infect Dis. 2011;24(5):484–9.
Article
PubMed
PubMed Central
Google Scholar
Okoro CK, Kingsley RA, Connor TR, Harris SR, Parry CM, Al-Mashhadani MN, Kariuki S, Msefula CL, Gordon MA, de Pinna E, et al. Intracontinental spread of human invasive salmonella typhimurium pathovariants in sub-Saharan Africa. Nat Genet. 2012;44(11):1215–21.
Article
CAS
PubMed
PubMed Central
Google Scholar
Langridge GC, Fookes M, Connor TR, Feltwell T, Feasey N, Parsons BN, Seth-Smith HM, Barquist L, Stedman A, Humphrey T, et al. Patterns of genome evolution that have accompanied host adaptation in salmonella. Proc Natl Acad Sci U S A. 2015;112(3):863–868.
Article
CAS
PubMed
Google Scholar
Vaillant V, Haeghebaert S, Desenclos JC, Bouvet P, Grimont F, Grimont PA, Burnens AP. Outbreak of salmonella dublin infection in France, November - December 1995. Euro Surveill. 1996;1(2):9–10.
CAS
PubMed
Google Scholar
Mohammed M, Delappe N, O'Connor J, Mc KP, Garvey P, Cormican M. Whole genome sequencing provides an unambiguous link between salmonella Dublin outbreak strain and a historical isolate. Epidemiol Infect. 2015:1–6.
Schadich E, Dzubak P, Hajduch M. Role of salmonella Typhi vi antigen and secretory systems on immune response. Curr Pharm Des. 2016;22(41):6251–6260.
Article
CAS
PubMed
Google Scholar
Kaur J, Jain SK. Role of antigens and virulence factors of salmonella enterica serovar Typhi in its pathogenesis. Microbiol Res. 2012;167(4):199–210.
Article
CAS
PubMed
Google Scholar
Herrero-Fresno A, Wallrodt I, Leekitcharoenphon P, Olsen JE, Aarestrup FM, Hendriksen RS. The role of the st313-td gene in virulence of salmonella typhimurium ST313. PLoS One. 2014;9(1):e84566.
Article
PubMed
PubMed Central
Google Scholar
Kingsley RA, Msefula CL, Thomson NR, Kariuki S, Holt KE, Gordon MA, Harris D, Clarke L, Whitehead S, Sangal V, et al. Epidemic multiple drug resistant salmonella typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype. Genome Res. 2009;19(12):2279–87.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 2008;18(5):821–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, et al. The RAST server: rapid annotations using subsystems technology. BMC Genomics. 2008;9:75.
Article
PubMed
PubMed Central
Google Scholar
Li H, Durbin R. Fast and accurate short read alignment with burrows-wheeler transform. Bioinformatics. 2009;25(14):1754–60.
Article
CAS
PubMed
PubMed Central
Google Scholar
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. The sequence alignment/map format and SAMtools. Bioinformatics. 2009;25(16):2078–9.
Article
PubMed
PubMed Central
Google Scholar
Posada D. jModelTest: phylogenetic model averaging. Mol Biol Evol. 2008;25(7):1253–6.
Article
CAS
PubMed
Google Scholar
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 2013;30(12):2725–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. BLAST+: architecture and applications. BMC bioinformatics. 2009;10:421.
Article
PubMed
PubMed Central
Google Scholar
Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA. BLAST ring image generator (BRIG): simple prokaryote genome comparisons. BMC Genomics. 2011;12:402.
Article
CAS
PubMed
PubMed Central
Google Scholar
Morris C, Tam CK, Wallis TS, Jones PW, Hackett J. Salmonella enterica serovar Dublin strains which are vi antigen-positive use type IVB pili for bacterial self-association and human intestinal cell entry. Microb Pathog. 2003;35(6):279–84.
Article
CAS
PubMed
Google Scholar
Hashimoto Y, Ezaki T, Li N, Yamamoto H. Molecular cloning of the ViaB region of salmonella typhi. FEMS Microbiol Lett. 1991;69(1):53–6.
Article
CAS
PubMed
Google Scholar
Pickard D, Wain J, Baker S, Line A, Chohan S, Fookes M, Barron A, Gaora PO, Chabalgoity JA, Thanky N, et al. Composition, acquisition, and distribution of the vi exopolysaccharide-encoding salmonella enterica pathogenicity island SPI-7. J Bacteriol. 2003;185(17):5055–65.
Article
CAS
PubMed
PubMed Central
Google Scholar
Parkhill J, Dougan G, James KD, Thomson NR, Pickard D, Wain J, Churcher C, Mungall KL, Bentley SD, Holden MT, et al. Complete genome sequence of a multiple drug resistant salmonella enterica serovar Typhi CT18. Nature. 2001;413(6858):848–52.
Article
CAS
PubMed
Google Scholar
Hirose K, Ezaki T, Miyake M, Li T, Khan AQ, Kawamura Y, Yokoyama H, Takami T. Survival of vi-capsulated and vi-Deleted salmonella typhi strains in cultured macrophage expressing different levels of CD14 antigen. FEMS Microbiol Lett. 1997;147(2):259–65.
Article
CAS
PubMed
Google Scholar
Looney RJ, Steigbigel RT. Role of the vi antigen of salmonella typhi in resistance to host defense in vitro. J Lab Clin Med. 1986;108(5):506–16.
CAS
PubMed
Google Scholar
Logan SM. Flagellar glycosylation - a new component of the motility repertoire? Microbiology. 2006;152(Pt 5):1249–62.
Article
CAS
PubMed
Google Scholar
De Maayer P, Cowan DA. Flashy flagella: flagellin modification is relatively common and highly versatile among the Enterobacteriaceae. BMC Genomics. 2016;17:377.
Article
PubMed
PubMed Central
Google Scholar
Kapitein N, Mogk A. Deadly syringes: type VI secretion system activities in pathogenicity and interbacterial competition. Curr Opin Microbiol. 2013;16(1):52–8.
Article
PubMed
Google Scholar
Pezoa D, Yang HJ, Blondel CJ, Santiviago CA, Andrews-Polymenis HL, Contreras I. The type VI secretion system encoded in SPI-6 plays a role in gastrointestinal colonization and systemic spread of salmonella enterica serovar typhimurium in the chicken. PLoS One. 2013;8(5):e63917.
Article
CAS
PubMed
PubMed Central
Google Scholar
Blondel CJ, Jimenez JC, Leiva LE, Alvarez SA, Pinto BI, Contreras F, Pezoa D, Santiviago CA, Contreras I. The type VI secretion system encoded in salmonella pathogenicity island 19 is required for salmonella enterica serotype Gallinarum survival within infected macrophages. Infect Immun. 2013;81(4):1207–20.
Article
CAS
PubMed
PubMed Central
Google Scholar
Mohammed M, Cormican M. Whole genome sequencing provides insights into the genetic determinants of invasiveness in salmonella Dublin. Epidemiol Infect. 2016;144(11):2430–9.
Article
CAS
PubMed
Google Scholar
Figueroa-Bossi N, Bossi L. Inducible prophages contribute to salmonella virulence in mice. Mol Microbiol. 1999;33(1):167–76.
Article
CAS
PubMed
Google Scholar
Ho TD, Figueroa-Bossi N, Wang M, Uzzau S, Bossi L, Slauch JM. Identification of GtgE, a novel virulence factor encoded on the Gifsy-2 bacteriophage of salmonella enterica serovar typhimurium. J Bacteriol. 2002;184(19):5234–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Moreno Switt AI, den Bakker HC, Cummings CA, Rodriguez-Rivera LD, Govoni G, Raneiri ML, Degoricija L, Brown S, Hoelzer K, Peters JE, et al. Identification and characterization of novel Salmonella Mobile elements involved in the dissemination of genes linked to virulence and transmission. PLoS One. 2012;7(7):e41247.
Article
PubMed
PubMed Central
Google Scholar
Wallis TS, Paulin SM, Plested JS, Watson PR, Jones PW. The salmonella dublin virulence plasmid mediates systemic but not enteric phases of salmonellosis in cattle. Infect Immun. 1995;63(7):2755–61.
CAS
PubMed
PubMed Central
Google Scholar
Valone SE, Chikami GK, Miller VL. Stress induction of the virulence proteins (SpvA, −B, and -C) from native plasmid pSDL2 of salmonella dublin. Infect Immun. 1993;61(2):705–13.
CAS
PubMed
PubMed Central
Google Scholar
Gong M, Ling SS, Lui SY, Yeoh KG, Ho B. Helicobacter pylori gamma-glutamyl transpeptidase is a pathogenic factor in the development of peptic ulcer disease. Gastroenterology. 2010;139(2):564–73.
Article
CAS
PubMed
Google Scholar
Schmees C, Prinz C, Treptau T, Rad R, Hengst L, Voland P, Bauer S, Brenner L, Schmid RM, Gerhard M. Inhibition of T-cell proliferation by helicobacter pylori gamma-glutamyl transpeptidase. Gastroenterology. 2007;132(5):1820–33.
Article
CAS
PubMed
Google Scholar
Lambert MA, Smith SG. The PagN protein of salmonella enterica serovar typhimurium is an adhesin and invasin. BMC Microbiol. 2008;8:142.
Article
PubMed
PubMed Central
Google Scholar
Lambert MA, Smith SG. The PagN protein mediates invasion via interaction with proteoglycan. FEMS Microbiol Lett. 2009;297(2):209–16.
Article
CAS
PubMed
Google Scholar
Yang Y, Wan C, Xu H, Aguilar ZP, Tan Q, Xu F, Lai W, Xiong Y, Wei H. Identification of an outer membrane protein of salmonella enterica serovar typhimurium as a potential vaccine candidate for salmonellosis in mice. Microbes Infect/Institut Pasteur. 2013;15(5):388–98.
Article
CAS
Google Scholar
Burns AM, Lawlor PG, Gardiner GE, McCabe EM, Walsh D, Mohammed M, Grant J, Duffy G. Salmonella occurrence and Enterobacteriaceae counts in pig feed ingredients and compound feed from feed mills in Ireland. Prev Vet Med. 2015;121(3–4):231–9.
Article
PubMed
Google Scholar
Liebana E, Garcia-Migura L, Clouting C, Cassar CA, Clifton-Hadley FA, Lindsay EA, Threlfall EJ, Chappell SA, Davies RH. Investigation of the genetic diversity among isolates of salmonella enterica serovar Dublin from animals and humans from England, Wales and Ireland. J Appl Microbiol. 2002;93(5):732–44.
Article
CAS
PubMed
Google Scholar