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The pathogen recognition sensor, NOD2, is variably expressed in patients with pulmonary tuberculosis
- Sanjay Lala†1,
- Keertan Dheda†2, 3Email author,
- Jung-Su Chang2,
- Jim F Huggett2,
- Louise U Kim2,
- Margaret A Johnson4,
- Graham AW Rook2,
- Satish Keshav1 and
- Alimuddin Zumla2
© Lala et al; licensee BioMed Central Ltd. 2007
Received: 27 April 2007
Accepted: 16 August 2007
Published: 16 August 2007
NOD2, an intracellular pathogen recognition sensor, modulates innate defences to muropeptides derived from various bacterial species, including Mycobacterium tuberculosis (MTB). Experimentally, NOD2 attenuates two key putative mycobactericidal mechanisms. TNF-α synthesis is markedly reduced in MTB-antigen stimulated-mononuclear cells expressing mutant NOD2 proteins. NOD2 agonists also induce resistance to apoptosis, and may thus facilitate the survival of MTB in infected macrophages. To further define a role for NOD2 in disease pathogenesis, we analysed NOD2 transcriptional responses in pulmonary leucocytes and mononuclear cells harvested from patients with pulmonary tuberculosis (PTB).
We analysed NOD2 mRNA expression by real-time polymerase chain-reaction in alveolar lavage cells obtained from 15 patients with pulmonary tuberculosis and their matched controls. We compared NOD2 transcriptional responses, in peripheral leucocytes, before and after anti-tuberculous treatment in 10 patients. In vitro, we measured NOD2 mRNA levels in MTB-antigen stimulated-mononuclear cells.
No significant differences in NOD2 transcriptional responses were detected in patients and controls. In some patients, however, NOD2 expression was markedly increased and correlated with toll-like-receptor 2 and 4 expression. In whole blood, NOD2 mRNA levels increased significantly after completion of anti-tuberculosis treatment. NOD2 expression levels did not change significantly in mononuclear cells stimulated with mycobacterial antigens in vitro.
There are no characteristic NOD2 transcriptional responses in PTB. Nonetheless, the increased levels of NOD2 expression in some patients with severe tuberculosis, and the increases in expression levels within peripheral leucocytes following treatment merit further studies in selected patient and control populations.
The innate immune system is postulated to play a crucial role in the elimination or control of Mycobacterium tuberculosis (MTB), which causes infectious tuberculosis [1, 2]. These innate immune responses are triggered when MTB-derived molecules are sensed by toll-like receptors (TLRs), a family of membrane proteins, as well as by nucleotide-binding oligomerization domain 2 (NOD2; also known as CARD15), an intracellular pathogen recognition sensor. Activation of TLRs by MTB-antigens appears to be an important event in the control of infection. For example, mice that lack the toll-like receptor (TLR) adaptor molecule myeloid differentiation factor 88 (MyD88) are more susceptible to pneumonia following aerogenic infection with MTB .
The nature of these innate responses, however, appears complex and is not fully elucidated. For example, experimental studies show that MTB-induced TLR signalling effects both cellular activation  and apoptosis . Similarly, the innate responses mediated by NOD2, in response to MTB-derived antigens, vary in different experimental systems.
NOD2 senses muramyl dipeptide (MDP) [6, 7] a component of peptigoglycan that is found in mycobacterial cell walls. A recent in vitro study suggests that NOD2 is an essential recognition molecule for MTB , and pronounced cellular activation is noted in NOD2-transfected cells that are stimulated with MDP or heat-killed MTB preparations. Furthermore, cytokine production is inhibited in MTB-stimulated peritoneal macrophages obtained from NOD2-deficient mice and in human peripheral blood mononuclear cells (PBMCs) that express truncated NOD2 proteins . On the other hand, MDP stimulation protects macrophages from apoptosis, which suggests that activation of NOD2 induces apoptosis resistance which facilitates the survival of MTB in macrophages .
The role of NOD2 in the pathogenesis of human MTB-infection is unknown. In vitro, human PBMCs that express truncated NOD2 proteins synthesise significantly less cytokines after stimulation with MTB-derived antigens. Truncated NOD2 proteins are encoded by mutations in the NOD2 gene that predispose individuals to Crohn's disease, a granulomatous inflammatory bowel disease [9, 10]. The prevalence of these Crohn's disease-associated mutations has not been fully described in all population groups where tuberculosis is endemic although these mutations are rare in African patients with tuberculosis .
To further define a role for NOD2 in disease pathogenesis, we analysed NOD2 mRNA transcriptional responses in pulmonary leucocytes and PBMCs harvested from patients with pulmonary tuberculosis (PTB) and healthy controls. We determined whether changes in NOD2 transcription, if present, are characteristic for patients with tuberculosis: increased transcriptional responses may suggest that MTB-infected macrophages are resistant to apoptosis whereas decreased transcriptional responses may suggest that cellular activation is diminished in infected macrophages. As various pathogen associated-molecular patterns (PAMPs) specifically alter host transcriptional responses , we analysed and correlated the transcriptional responses of other TLRs with NOD2 in patients with PTB.
Patients and samples
Fifteen HIV-negative patients with culture proven pulmonary tuberculosis (PTB), who donated blood and lung bronchoalveolar lavage (BAL) samples, were recruited in London, United Kingdom. All patients with PTB had pan-sensitive isolates, received standard short course chemotherapy (6 to 9 months) and demonstrated clinical and radiological response to anti-TB treatment. Control donors (n = 15) were healthy volunteers matched to the TB patients for age (within 4 years), sex and ethnicity. They were asymptomatic, had no risk factors for HIV infection (but were not formally tested), had normal chest radiographs and were assumed, based on antigen-specific (ESAT-6 and CFP-10) peripheral mononuclear cell IFN-γ responses, not to be latently infected (T SPOT TB, Oxford Immunotec, England) . Control BAL samples were obtained from six control donors.
Whole blood (20 mL) was taken, after informed consent, within the first 2 weeks of anti-TB treatment (baseline). 2.5 mL whole blood was immediately transferred into PAXgene Blood RNA Tubes (Qiagen) for isolation and purification of intracellular RNA. The remaining blood, where relevant, was used for further experiments. Ten donors with PTB were bled again within 4 weeks of stopping chemotherapy. Approval was obtained from the Royal Free and UCLH hospital ethics committees.
BAL and Radiographic scoring
BAL fluid, obtained from a radiologically affected lung segment, was concentrated ~10 fold before analysis whilst cell pellets were immediately fixed in RNA stabilisation buffer. In control donors the right middle lobe was lavaged. When possible, lymphocyte counts in BAL were confirmed by flow cytometry (104 gated events) after staining ~7.5 × 105 cells with anti CD4-FITC, anti CD8-PE and anti CD3-PercP antibodies (BD Biosciences, UK). To determine the extent of pre-treatment radiological disease, two radiologists, blinded to patient details, scored chest radiographs for air space shadowing, reticular opacities and cavitation.
Enzyme-linked-immunospot (ELISPOT) assays
Peripheral T-cell IFN-γ ELISPOT responses to ESAT-6 and CFP-10 peptide pools were determined to exclude latent TB infection (T SPOT TB, Oxford Immunotec, England), as previously described [14, 13, 15].
Culture and infection of PBMCs with M. tuberculosis
PBMCs from five healthy control donors were separated from heparinized blood (50 ml) by Ficoll density gradient centrifugation, and cells were reconstituted at a final concentration of 1 × 106 cells/ml. To evaluate NOD2 gene regulation PBMCs were cultured for 66 hours in the presence of live H37RV M. tuberculosis, a clinical isolate (Beijing strain), live environmental mycobacterium (M. vaccae NCTC 11659) and medium alone. Cells were cultured in RPMI 1640 supplemented with 5% heat-inactivated human AB serum and 1% L-glutamine without antibiotics at 37°C and 5% CO2 in a category 3 laboratory and harvested at 18, 24, 48, and 66 h post-treatment. All strains were grown in Middlebrook 7H10 agar (Difco) containing 10% v/v oleic acid/albumin/dextrose/catalase supplement (BD Biosciences) in the category 3 laboratory. Mycobacteria were disaggregated by vigorous vortexing with glass beads and counted using a Neubauer hemocytometer as previously described . A direct microscopic count was performed to determine mycobacterial concentration. PBMCs were infected with living mycobacteria at a dose of 1 organism per macrophage (10% monocytes in PBMC). The viability of mycobacteria was assessed by culturing the diluted bacteria on Middlebrook 7H10 agar.
Reverse transcription and real-time PCR
Primer and probe sequences used to quantify gene expression by real-time PCR. Primer sequences for toll-like-receptor 2, 4, 6, 7 and 9  and IL-4δ2  have previously been published.
* Probe sequence 5'-(FAM-TAMRA)-3'
◇ L primer-5'-3'
□ R primer-5'-3'
Data was analysed using the Mann-Whitney U test, Wilcoxon matched pairs test, Spearman rank-sum correlation and linear regression on logged data.
Demographic details and lavage cell counts at recruitment. Demographic details and radiographic scores are of 15 patients with pulmonary tuberculosis with their matched controls; the lavage cell counts are those of 10 patients and 6 controls. All participants were recruited in London, United Kingdom.
Numbers in parenthesis indicate %
Age (median; range in years)
>50% airspace shadowing of total lung field
BAL (mean ± SE)
Total leucocytes (× 104/ml)
31 ± 8
12.8 ± 4.2
lymphocyte count (× 104/ml)
15 ± 4
2.7 ± 1.4
CD4: CD8 ratio
3.8 ± 1
2.55 ± 0.9
IFN-γ copy number
13 [4–113]; p = 0.0005
1.1 [.4–1.8]; p = 0.0007
Broncho-alveolar lavage (BAL) fluid analyses in patients with PTB and controls
BAL fluid recovered from patients with PTB were more cellular than controls, contained predominantly alveolar macrophages, and contained a significantly greater number of leucocytes and lymphocytes (Table 1). In PTB-affected patients, IFN-γ mRNA levels and the Th1/Th2 (IFN-γ/IL-4) ratio were significantly elevated compared to control subjects (Table 1).
Pulmonary leucocytes express NOD2 mRNA
NOD2, and TLR2 and TLR4 mRNA expression correlate in pulmonary leucocytes obtained from patients with PTB
NOD2 expression increases in whole blood following anti-tuberculous therapy
Signalling pathways activated by NOD2
Following activation by MDP, NOD2 triggers downstream cellular responses mediated through NF-κB and mitogen-activated protein kinase (MAPK) activation . This results in the production of various cytokines, such as TNFα and IL-4, which are important in regulating immune responses to MTB [1, 17]. We therefore compared NOD2 mRNA with the transcriptional responses of selected cytokines in BAL-derived cells obtained from patients with PTB (n = 15) and controls (n = 6). Although there were clear differences in the expression of some cytokines (IFNγ, IL-4 and its splice variant and antagonist, IL-4δ2) in patients with TB and controls, there was no correlation between expression of these cytokines and NOD2. There was also no correlation between NOD2 and TNFα transcriptional responses in patients and controls. In addition, NOD2 mRNA expression did not correlate with expression of mRNA encoding several proteins involved in apoptosis (FLIP, FLICE, Bcl-2, Bax, Fas, FasL and Bfl-1) although high levels of mRNA encoding the anti-apoptotic protein FLICE were measured in BAL-derived cells obtained from the two patients with elevated NOD2 mRNA levels.
NOD2 mRNA expression is not regulated in PMBC freshly inoculated with live strains of mycobacteria
NOD2, a member of the phylogenetically conserved NLR (NACHT-leucine-rich repeat) family, is an essential pattern recognition sensor for MTB-derived antigens. Mycobacterial antigens fail to induce an appropriate increase in TNF-α synthesis in human PBMC that express mutant NOD2 proteins and in murine macrophages lacking NOD2 . The gene mutations that encode mutant NOD2 proteins, however, appear to be rare in patients with tuberculosis. NOD2 agonists may also modulate innate responses to MTB by inducing resistance to apoptosis that facilitates the survival of MTB in infected macrophages . Thus, NOD2 may play a role in attenuating two key putative mycobactericidal pathways. To further define a role for NOD2 in disease pathogenesis, we analysed NOD2 transcriptional responses in pulmonary leucocytes and mononuclear cells harvested from patients with pulmonary tuberculosis (PTB).
Our gene expression studies revealed that there are no characteristic NOD2 transcriptional responses in pulmonary leucocytes obtained from patients with tuberculosis. NOD2 mRNA levels in patients generally compared with those in control donors. Nonetheless, increased NOD2 levels, which correlate with TLR2 and TLR4 expression, were noted in some patients with severe infection. This observation, coupled with the increases in NOD2 expression in peripheral leucocytes following treatment, suggest further study in a larger group of patients to confirm a role for NOD2 in PTB. In the present study, we only measured total leucocyte and lymphocyte counts in bronchoalveolar lavage fluid. As NOD2 is most prominently expressed in monocytes, with very little expression in neutrophils and lymphocytes, it is most likely that monocytes account for the overwhelming majority of NOD2 expression .
We did not quantify the number of epithelial cells present in broncho-alveolar fluid and we cannot determine the effect of mycobacterial infection on NOD2 expression in respiratory epithelial cells. Baseline NOD2 expression levels in primary respiratory epithelial cells is low  although NOD2 mRNA expression is enhanced in immortalised human bronchial epithelial cells that are infected with Streptococcus pneumoniae. It would therefore be important to determine the relative contribution of respiratory epithelial cells and monocytes to the increases in NOD2 expression seen in some patients.
In the present study, NOD2 mRNA expression levels were similar in patients (who often have active disease for many weeks prior to diagnosis) and controls. This does not exclude a role for NOD2 during the early stages of MTB infection, when M. tuberculosis encounters the alveolar macrophage and innate immune pathways are first activated. It is also possible, however, that the absolute levels of NOD2 expression may not play a role in determining susceptibility to MTB infection. Rather, structural variants of NOD2 proteins may modulate host immune responses as suggested by in vitro studies . Thus, studies are required to confirm whether individuals with gene mutations encoding for mutant NOD2 proteins are predisposed to MTB-infection. The lack of an association between Crohn's disease-associated NOD2 gene mutations and tuberculosis in African patients  does not exclude a role for NOD2 in MTB-infection because NOD2 gene mutations are probably rare in African populations . It would be instructive, therefore, to determine whether NOD2 gene mutations are associated with MTB-infection in Caucasian populations, where these mutations occur with much greater frequency.
We were surprised to find significantly higher levels of NOD2 mRNA expression in peripheral leucocytes obtained from patients who completed anti-tuberculosis therapy. Firstly, we hypothesise that this could have been due to translocation of antigen-specific leucocytes predominantly to the site of disease (lungs) with few NOD2 expressing leucocytes in the peripheral compartment, and reversal of this profile after treatment. However, the lack of preferential NOD2 upregulation in the lung makes this unlikely. Secondly, we speculate that MTB infection may subvert protective innate responses by downregulating NOD2 expression, whose levels therefore increase after successful chemotherapy. We might expect this to occur in parallel with TNF-α as this cytokine up-regulates NOD2 mRNA expression in various cell lineages including PBMC [26, 27]. However, in keeping with the observations of other investigators [28, 29], we did not observe increased TNF-α mRNA expression after treatment completion. We did not investigate the relationship between NOD2 and soluble TNF-α receptors, which may modulate TNF-α levels. Thirdly, it is intriguing to speculate that increased levels of NOD2 mRNA, which occur with completion of TB treatment, is a correlate of protective immunity. Similar longitudinal changes may occur with IFN-γ [17, 29, 30] and the Th1-like splice variant IL-4δ2 , which both increase significantly with anti-TB treatment. In keeping with these observations IL-4δ2 mRNA levels are also increased in healthy subjects with latent MTB infection who contain the disease [31, 32]. Longitudinal studies in TB infected patients, however, would be required to address the role of NOD2 in this context. Interestingly, preliminary data indicate that mycobacterial antigens regulate the expression of NOD2 splice variants  and further studies are required to clarify their role in tuberculosis.
A significant limitation of this study is that we did not study MTB-specific responses in subjects with known NOD2 gene mutations. However, we found these patients difficult to recruit in our clinical setting. We also acknowledge that real time PCR measures steady state mRNA levels only and not the activity of NOD2 protein, which is physiologically active at concentrations too low to detect by immunoassay. This study was powered to detect a 0.5 log change in NOD2 mRNA levels although smaller changes may be biologically meaningful. However, mRNA levels in patients and controls were similar and we found no trends suggesting that inter-group difference might be present.
Overall, our findings show that there are no characteristic NOD2 transcriptional responses in pulmonary leucocytes obtained from patients with PTB. Nonetheless, the increased levels of NOD2 mRNA expression in peripheral leucocytes obtained from patients completing treatment and correlation between NOD2 and TLR2 and TLR4 mRNA expression in pulmonary leucocytes obtained from some patients with severe tuberculosis does not exclude a role for NOD2 in disease pathogenesis. The role of mutant NOD2 proteins in MTB-infection in different ethnic groups needs to be defined.
The authors would like to thank the TB clinic and bronchoscopy staff at the Royal Free Hospital NHS trust for facilitating patient recruitment, the radiologists for scoring the x-rays, and the patients and volunteers that took part in the study. This work was, in part, supported by the SA Research Chairs Initiative (KD), sponsored by the South African NRF and DST. SL was supported by a Crohn's in Childhood Research Association (CICRA) Research Fellowship.
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