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Limits of patient isolation measures to control extended-spectrum beta-lactamase–producing Enterobacteriaceae: model-based analysis of clinical data in a pediatric ward
© Domenech de Cellès et al.; licensee BioMed Central Ltd. 2013
Received: 12 October 2012
Accepted: 4 April 2013
Published: 24 April 2013
Extended-spectrum beta-lactamase–producing Enterobacteriaceae (ESBL-E) are a growing concern in hospitals and the community. How to control the nosocomial ESBL-E transmission is a matter of debate. Contact isolation of patients has been recommended but evidence supporting it in non-outbreak settings has been inconclusive.
We used stochastic transmission models to analyze retrospective observational data from a two-phase intervention in a pediatric ward, successively implementing single-room isolation and patient cohorting in an isolation ward, combined with active ESBL-E screening.
For both periods, model estimates suggested reduced transmission from isolated/cohorted patients. However, most of the incidence originated from sporadic sources (i.e. independent of cross-transmission), unaffected by the isolation measures. When sporadic sources are high, our model predicted that even substantial efforts to prevent transmission from carriers would have limited impact on ESBL-E rates.
Our results provide evidence that, considering the importance of sporadic acquisition, e.g. endogenous selection of resistant strains following antibiotic treatment, contact-isolation measures alone might not suffice to control ESBL-E. They also support the view that estimating cross-transmission extent is key to predicting the relative success of contact-isolation measures. Mathematical models could prove useful for those estimations and guide decisions concerning the most effective control strategy.
Multidrug-resistant bacteria are a continuing threat in hospital settings, causing a high morbidity and mortality worldwide . Among Gram-negative bacteria, resistance to beta-lactams mainly results from extended-spectrum beta-lactamase, a major group of plasmid-mediated enzymes conferring resistance to the penicillins and first- to third-generation cephalosporins . Extended-spectrum beta-lactamase–producing Enterobacteriaceae (ESBL-E) are becoming increasingly prevalent in hospitals, with consequences now documented in terms of increased mortality and delayed onset of effective therapy . Moreover, it is now recognized that ESBL-E also spread in the community, which can serve as a reservoir for hospitals [4, 5]. Strategies to control the spread of multiresistant bacteria, particularly ESBL-E, in hospitals are being debated [6, 7], and disparities in infection-control practices have been reported as a consequence . Enhanced barrier precautions are advocated and some authors (albeit not all, see ) have reported successful curtailment of outbreaks using those measures [10, 11]. In the non-outbreak setting, however, achieving ESBL-E control is more difficult and, to date, the evidence for efficacy of barrier precautions has been scarce , and sometimes inconclusive .
ESBL-E colonization can result from patient-to-patient transmission and/or emergence or selection during antibiotic therapy. Given the relative importance of these two routes, different interventions can be implemented to control one or both sources . Contact isolation of carriers is typically used to interrupt transmission from detected colonized/infected patients, but is not expected to affect endogenous selection . Contact isolation of patients is currently recommended by several guidelines but concerns exist that isolation might, in some cases, lower the quality of care . Contact isolation can include a wide spectrum of interventions, ranging from barrier nursing (e.g. gowns and gloves) to a full isolation ward with designated staff (i.e. nurse cohorting). It is likely that the impact of any such intervention will depend on locally variable factors (e.g. the case-mix of patients, physical environment, available resources) and the epidemiology of the pathogen . Considering the substantial resources involved in a screening-and-isolation program [13, 16], it is of paramount importance to determine their efficacy accurately. In addition, while major efforts have been devoted to understand the impact of interventions on controlling the spread of Gram-positive pathogens, reliable evidence for Gram-negative bacteria, including ESBL-E, is lacking .
Herein, we used observational data from a two-phase intervention study in a pediatric ward, during which we successively implemented two contact-isolation strategies (single-room isolation and isolation ward with nurse cohorting), combined with active surveillance for ESBL-E carriage. Using mechanistic modeling, our aims were to gain insight into ESBL-E epidemiology, clarify the role of contact isolation in preventing ESBL-E spread and predict effective interventions in various settings.
This study used observational data collected as part of systematic routine surveillance procedures in a university hospital ward, with an endemic level of multidrug-resistant bacteria. This surveillance protocol followed the official recommendations of the French Ministry of Health and the French Society for Hygiene (http://sante.gouv.fr/les-infections-nosocomiales-recommandations-aux-etablissements-de-soins.html) and was approved by the Nosocomial Infections Fighting Committee. All the patients’ parents received general information about the hospital infection control strategy at admission. No more information than those collected by routine procedures was used; in particular, no additional individual data, biological collection or sample was required. Therefore, an ethics committee approval was not required for this study.
Setting and description of interventions
Necker Enfants–Malades is a 650-bed tertiary-care teaching hospital that handles 55 000 admissions per year. The pediatrics department includes a 21-bed unit that admits 300–350 children annually. Approximately half of the children are referred from other hospitals, 20% from other units in the hospital, and the remaining 30% from the emergency department. In May 2009, a whole-ward screening revealed an unusually high ESBL-E prevalence among patients, which prompted the subsequent interventions, beginning in June 2009 and described below. All children admitted from 1 June 2009 through 15 July 2010 were included in our study. All episodes of ESBL-E colonization or infection diagnosed during the stay or up to 2 days after discharge from the pediatric ward were included. During the study period, a rectal swab specimen was obtained at admission and once a week throughout each child’s stay. Swabs were plated on a selective chromogenic medium for ESBL screening (chromID ESBL Agar, bioMérieux, Marcy-l’Etoile, France). Enterobacteriaceae were isolated and identified according to the recommendations of the Comité de l’Antibiogramme de la Société Française de Microbiologie. ESBL production was evaluated with the double-disc synergy test and the Etest (AB Biodisk, Solna, Sweden) for ceftazidime and ceftazidime–clavulanate. Patients with ESBL-E isolated within 48 hours following admission from screening samples or from an infected site were considered imported. Other cases were considered acquired.
Infection control measures
From June 2009 through February 2010 (first period, P1), the following baseline infection-control practices were in place in the pediatrics ward. All children with ESBL-E–positivity in clinical or screening specimens were placed in single rooms and in contact isolation, within 24 h following test results. Briefly, these measures consisted of flagging microbiological reports, charts and doors of rooms of ESBL-E–positive patients with a warning symbol; wearing gowns and gloves when caring for these patients; emphasizing hand hygiene before and after patient contact; and notifying ESBL-E carriage when patients were transferred to another unit. Contact isolation was maintained throughout the entire duration of hospitalization. During the second period (P2), from February 2010 to July 2010, a cohorting protocol was added to the aforementioned measures. All known ESBL-E carriers were moved and grouped at one end of the pediatrics ward in an 8-bed unit, and cared for by a dedicated nursing team. The isolation policy was similar to P1, except that previously known carriers (i.e. patients with an episode of ESBL-E carriage in the past 6 months) were placed in isolation immediately upon admission.
Imported cases are isolated at rate δ 1, and δ 2 for acquired cases, with δ 1>δ 2. When the isolation ward reaches full capacity, the possibility of isolating a patient no longer exists, until an isolated patient is discharged, i.e. the isolation rate is Δ(C *,I)=δ * C * if I < N I, 0 otherwise. Because the duration of ESBL-E carriage (estimated at 6 months ) typically exceeds hospital lengths of stay, we did not account for possible carriage clearance during the stay. The preemptive isolation of previously known carriers in P2 is modeled as an additional parameter ∈, representing the proportion of colonized inpatients immediately placed in isolation at admission.
Model parameters for both intervention periods
Sporadic acquisition rate
Transmission rate from unisolated patients
Transmission rate from isolated patients
Isolation rate for imported and acquired cases
δ 1,δ 2
Fraction of colonized inpatients placed in preemptive isolation
Discharge rates of susceptible, colonized and isolated patients
μ S,μ C,μ I
0.2, 0.2, 0.13
0.18, 0.18, 0.13
Number of patients
Number of isolation beds
Numerical implementation and estimation method
The model was implemented in the pomp package , operating in the R environment . Stochastic simulations of the model were performed using Gillespie’s exact algorithm . Parameters were estimated with the iterated filtering algorithm, described elsewhere . Profile likelihoods were used to derive 95% confidence intervals (CI) . Technical details about model implementation and estimation are given in the electronic supplementary material (Additional file 1); the estimation procedure was also verified by using simulated data (Additional file 2).
Model fitting was assessed by visual inspection for both weekly point prevalence (i.e. point prevalence on Monday) and weekly incidence data. 10 000 model simulations were used to derive mean values and 95% prediction intervals, and were compared to observed P1 and P2 data.
Parameter estimates and model checking
Epidemiological data for both intervention periods
all patients, at admission and every Monday
all patients, at admission and every Monday
within 24 h following test positivity
preemptive isolation of colonized inpatients, otherwise within 24 h following positivity
Type of isolation
Mean occupancy (range)
Mean staff-to-patient ratio (range)
Mean length of stay (range), days
Incidence, per 1 000 pt-d
During P2, the isolation ward had little impact on acquisition rates: the sporadic acquisition rate remained the only statistically significant source of acquisitions in the ward, while transmission from unisolated patients remained unchanged and insignificant (likelihood ratio test, null hypothesis β 1 = 0, p-value 0.2). Admission prevalence was estimated at 0.15 for this period. Again, model fitting was adequate, with a total of 10 (4–18) predicted acquisitions, a 4.2 (1.7–7.6)/1 000 pt-d incidence, compared to 10 observed acquisitions (Figure 3), corresponding to a predicted 3.4/1 000 pt-d incidence resulting from sporadic sources and 0.8/1 000 pt-d a consequence of transmission from unisolated carriers, while the incidence due to cohorted patients was hypothetically set at 0. Crucially, the incidence resulting from sporadic acquisitions was unaffected by the isolation-ward implementation.
Although we estimated parameters separately for P1 and P2, estimations of acquisition parameters for the entire period are relevant. Doing so, β 1 was estimated at 0.006 (0–0.015) per day and β 0 at 0.008 (0.002–0.015) per day. Thus, transmission from unisolated carriers remained statistically insignificant but a trend was observed (likelihood ratio test, null hypothesis β 1 = 0, p-value 0.08).
Predicted incidence (per 1 000 pt-d)
Observed incidence (per 1 000 pt-d)
Isolation ward without preemptive isolation
Isolation ward with preemptive isolation
Predicting the impact of multifaceted interventions
Impact of screening policy at admission
For acquired cases, isolation was assumed to occur 4 days after acquisition. However, because the exact acquisition date was unknown, this value was uncertain. Likewise, the value of direct-isolation proportion during P2 was uncertain, because previously unknown carriers colonized at admission could have been missed. Therefore, we conducted sensitivity analyses for these two parameters and found that even large variations of their values had little impact on our estimates (Additional file 1).
We used mechanistic modeling to assess the impact of contact-isolation measures to prevent ESBL-E spread in a pediatrics ward based on clinical data covering a 14-month period. ESBL-E incidence and mean prevalence decreased during the study period, and model estimates suggested that these declines were attributable to reduced transmission from isolated/cohorted patients. However, most of the incidence originated from sporadic sources, which were unaffected by contact isolation. When those sources are elevated, the model predicted that even substantial efforts to interrupt transmission from positive patients would have limited impact on controlling ESBL-E. Conversely, targeting both patient-to-patient transmission and sporadic sources would dramatically diminish incidence.
Several mathematical models have addressed the effect of contact isolation on methicillin-resistant Staphylococcus aureus acquisition rates [17, 18], but, to our knowledge, not on ESBL-E. We found weak evidence for transmission reduction associated with barrier precautions for isolation measures other than nurse and patient cohorting. While some patient-to-patient transmission was clinically likely (which is why we included it in the model and quantified its magnitude), the statistical signal in our small dataset was not strong enough to be able to rule out the hypothesis that there was no transmission with any degree of certainty. A robust result, however, was that the dominant ESBL-E–acquisition source was not associated with patient-to-patient transmission. These findings are consistent with recent reports indicating that in-hospital ESBL-E transmission is low in the non-outbreak setting [29–31]. Although we referred to non-cross–transmission sources as sporadic, the term “endogenous” has been coined to describe acquisition from a patient’s own flora driven by the selective pressure of antibiotics . Using a comparable model for cephalosporin-resistant Enterobacteriaceae, Bootsma et al. found the endogenous route to be the quasi-exclusive source of acquisitions in two intensive care units . Indeed, antibiotic use is recognized as a major risk factor of ESBL-E acquisition, especially in the non-outbreak setting. The mechanism involved might be the disruption of the anaerobic microflora in the intestinal tract, causing the suppression of a defense mechanism (the so-called colonization resistance) against antibiotic-resistant pathogens . The persistently high ESBL-E incidence during our study, despite aggressive detection and isolation, particularly in P2, could therefore be explained by unrestricted antibiotic use.
In recent years, ESBL-E have also emerged as important pathogens in the community. Elevated rates were reported and could result in a high influx of colonized patients into hospitals [5, 33]. In light of this potentially large reservoir, the usefulness of screening patients at admission, or at all, has been questioned in non-epidemic situations [16, 34]. Indeed, our results indicated that screening at admission would have little or no benefit when admission prevalence is low (<5%). For higher levels, they showed that some degree of control could be achieved by screening admitted patients. Admittedly, these results hold only if cross-transmission is extensive, for which we provided only weak evidence in this modeling study but which might be stronger in other settings.
Our study has several limitations. With respect to the mathematical model, a series of assumptions were made that merit being discussed. Patients were assumed to be homogeneous regarding the risk of acquiring or transmitting ESBL-E, even though risk factors for ESBL-E carriage have been described . More generally, like other modeling studies, several factors were omitted that could contribute markedly to ESBL-E spread, particularly staffing ratios and bed occupancy rates , even though both quantities were comparable in P1 and P2 (Table 2). More detailed models, such as individual-based models, are more appropriate to incorporate those factors , but at the cost of being more difficult to parameterize when limited data are available.
The assumption that no transmission originated from isolated patients in P2 might seem questionable. Adopting another hypothesis, however, would have led to violate the assumption of homogeneous mixing between patients that was made in the model formulation. Admittedly, imperfect separation between patients may have occurred; yet detecting such breaches would have required a close monitoring of staff contacts (e.g. with wearable sensors ), and a more elaborate model (e.g. network-based ) to integrate those data.
The test for detecting ESBL-E carriage was assumed to have perfect sensitivity. Relaxing that assumption, the sensitivity was estimated at 0.85 (0.56–1), and, therefore, not significantly different from 100%. In addition, assuming an imperfect sensitivity had little impact on the estimates, as judged by a simulation study (Additional file 2).
Concerning the internal validity of our results, because a hygiene-enhancement program was implemented concomitantly, we cannot rule out that the limited impact of patient-to-patient transmission was, indeed, due to that intervention, rather than to isolation measures. Hand-hygiene compliance was estimated from several audits during the study period and was high (>80%). Therefore, cross-transmission can be greater in units where compliance is lower. However, even in such settings, sporadic acquisition would still be expected to be contributory. Molecular-typing methods were not used to verify the findings of our transmission model, a clear limitation of the present study. Nevertheless, the difficulties of considering those methods as the standard reference (e.g. related to the discriminatory power of the method used, the arbitrary definition of an epidemiological linkage between two cases etc.) have been discussed [20, 39]. Notwithstanding this point, previous studies reported that, when used, both mathematical modeling and genotyping approaches yielded comparable results [21, 40].
Interventions were prompted by an unusually high ESBL-E prevalence in the ward, a situation possibly leading to regression to the mean effects when assessing isolation measures . Finally, our observations, obtained in an endemic setting, cannot be transposed to outbreak settings. Previous reports have shown that ESBL-E outbreaks often involve a particular epidemic and/or virulent clone, and contact isolation was able to eradicate ESBL-E before it became endemic [11, 41].
In conclusion, our results showed that, because of substantial sporadic acquisition sources, contact-isolation measures alone might not suffice to substantially reduce ESBL-E rates in hospital settings. The model could readily be extended to include more features, which might make it applicable to the analysis of other nosocomial pathogens as well. In light of these observations, it would be pertinent to investigate further the interplay between barrier precautions and antibiotic use, and the possible trade-off that might exist to choose the most effective control strategy.
We would like to thank Janet Jacobson and Christian Brun-Buisson for their helpful comments on the manuscript.
- Boucher HW, Talbot GH, Bradley JS, Edwards JE, Gilbert D, Rice LB, Scheld M, Spellberg B, Bartlett J: Bad bugs, no drugs: no ESKAPE! An update from the Infectious Diseases Society of America. Clin Infect Dis. 2009, 48 (1): 1-12. 10.1086/595011.View ArticlePubMedGoogle Scholar
- Paterson DL, Bonomo RA: Extended-spectrum beta-lactamases: a clinical update. Clin Microbiol Rev. 2005, 18 (4): 657-686. 10.1128/CMR.18.4.657-686.2005.View ArticlePubMedPubMed CentralGoogle Scholar
- Schwaber MJ, Carmeli Y: Mortality and delay in effective therapy associated with extended-spectrum beta-lactamase production in Enterobacteriaceae bacteraemia: a systematic review and meta-analysis. J Antimicrob Chemother. 2007, 60 (5): 913-920. 10.1093/jac/dkm318.View ArticlePubMedGoogle Scholar
- Friedmann R, Raveh D, Zartzer E, Rudensky B, Broide E, Attias D, Yinnon AM: Prospective evaluation of colonization with extended-spectrum beta-lactamase (ESBL)-producing Enterobacteriaceae among patients at hospital admission and of subsequent colonization with ESBL-producing Enterobacteriaceae among patients during hospitalization. Infect Control Hosp Epidemiol. 2009, 30 (6): 534-542. 10.1086/597505.View ArticlePubMedGoogle Scholar
- Kader AA, Kumar A, Kamath KA: Fecal carriage of extended-spectrum beta-lactamase-producing Escherichia coli and Klebsiella pneumoniae in patients and asymptomatic healthy individuals. Infect Control Hosp Epidemiol. 2007, 28 (9): 1114-1116. 10.1086/519865.View ArticlePubMedGoogle Scholar
- Conly JM, McEwen S, Hutchinson J, Boyd N, Callery S, Bryce E: Canadian Committee on Antibiotic Resistance report. Can J Infect Dis Med Microbiol. 2004, 15 (5): 257-260.PubMedPubMed CentralGoogle Scholar
- Kirkland KB: Taking off the gloves: toward a less dogmatic approach to the use of contact isolation. Clin Infect Dis. 2009, 48 (6): 766-771. 10.1086/597090.View ArticlePubMedGoogle Scholar
- Lowe C, Katz K, McGeer A, Muller MP: Disparity in infection control practices for multidrug-resistant Enterobacteriaceae. Am J Infect Control. 2012, 40 (9): 836-839. 10.1016/j.ajic.2011.11.008.View ArticlePubMedGoogle Scholar
- Macrae MB, Shannon KP, Rayner DM, Kaiser AM, Hoffman PN, French GL: A simultaneous outbreak on a neonatal unit of two strains of multiply antibiotic resistant Klebsiella pneumoniae controllable only by ward closure. J Hosp Infect. 2001, 49 (3): 183-192. 10.1053/jhin.2001.1066.View ArticlePubMedGoogle Scholar
- Paterson DL, Singh N, Rihs JD, Squier C, Rihs BL, Muder RR: Control of an outbreak of infection due to extended-spectrum beta-lactamase–producing Escherichia coli in a liver transplantation unit. Clin Infect Dis. 2001, 33 (1): 126-128. 10.1086/320882.View ArticlePubMedGoogle Scholar
- Shannon K, Fung K, Stapleton P, Anthony R, Power E, French G: A hospital outbreak of extended-spectrum beta-lactamase-producing Klebsiella pneumoniae investigated by RAPD typing and analysis of the genetics and mechanisms of resistance. J Hosp Infect. 1998, 39 (4): 291-300. 10.1016/S0195-6701(98)90294-8.View ArticlePubMedGoogle Scholar
- Goddard S, Muller MP: The efficacy of infection control interventions in reducing the incidence of extended-spectrum beta-lactamase-producing Enterobacteriaceae in the nonoutbreak setting: a systematic review. Am J Infect Control. 2011, 39 (7): 599-601. 10.1016/j.ajic.2010.09.018.View ArticlePubMedGoogle Scholar
- Conterno LO, Shymanski J, Ramotar K, Toye B, Zvonar R, Roth V: Impact and cost of infection control measures to reduce nosocomial transmission of extended-spectrum beta-lactamase-producing organisms in a non-outbreak setting. J Hosp Infect. 2007, 65 (4): 354-360. 10.1016/j.jhin.2006.12.014.View ArticlePubMedGoogle Scholar
- Harris AD, McGregor JC, Furuno JP: What infection control interventions should be undertaken to control multidrug-resistant Gram-negative bacteria?. Clin Infect Dis. 2006, 43 (Suppl 2): S57-S61.View ArticlePubMedGoogle Scholar
- Stelfox HT, Bates DW, Redelmeier DA: Safety of patients isolated for infection control. JAMA. 2003, 290 (14): 1899-1905. 10.1001/jama.290.14.1899.View ArticlePubMedGoogle Scholar
- Gardam MA, Burrows LL, Kus JV, Brunton J, Low DE, Conly JM, Humar A: Is surveillance for multidrug-resistant enterobacteriaceae an effective infection control strategy in the absence of an outbreak?. J Infect Dis. 2002, 186 (12): 1754-1760. 10.1086/345921.View ArticlePubMedGoogle Scholar
- Forrester M, Pettitt AN: Use of stochastic epidemic modeling to quantify transmission rates of colonization with methicillin-resistant Staphylococcus aureus in an intensive care unit. Infect Control Hosp Epidemiol. 2005, 26 (7): 598-606. 10.1086/502588.View ArticlePubMedGoogle Scholar
- Kypraios T, O’Neill PD, Huang SS, Rifas-Shiman SL, Cooper BS: Assessing the role of undetected colonization and isolation precautions in reducing methicillin-resistant Staphylococcus aureus transmission in intensive care units. BMC Infect Dis. 2010, 10: 29-10.1186/1471-2334-10-29.View ArticlePubMedPubMed CentralGoogle Scholar
- Bonten MJ, Slaughter S, Ambergen AW, Hayden MK, van Voorhis J, Nathan C, Weinstein RA: The role of “colonization pressure” in the spread of vancomycin-resistant enterococci: an important infection control variable. Arch Intern Med. 1998, 158 (10): 1127-1132. 10.1001/archinte.158.10.1127.View ArticlePubMedGoogle Scholar
- Bootsma MC, Bonten MJ, Nijssen S, Fluit AC, Diekmann O: An algorithm to estimate the importance of bacterial acquisition routes in hospital settings. Am J Epidemiol. 2007, 166 (7): 841-851. 10.1093/aje/kwm149.View ArticlePubMedGoogle Scholar
- Pelupessy I, Bonten MJ, Diekmann O: How to assess the relative importance of different colonization routes of pathogens within hospital settings. Proc Natl Acad Sci USA. 2002, 99 (8): 5601-5605. 10.1073/pnas.082412899.View ArticlePubMedPubMed CentralGoogle Scholar
- Zahar JR, Lanternier F, Mechai F, Filley F, Taieb F, Mainot EL, Descamps P, Corriol O, Ferroni A, Bille E: Duration of colonisation by Enterobacteriaceae producing extended-spectrum beta-lactamase and risk factors for persistent faecal carriage. J Hosp Infect. 2010, 75 (1): 76-78. 10.1016/j.jhin.2009.11.010.View ArticlePubMedGoogle Scholar
- Cooper BS, Stone SP, Kibbler CC, Cookson BD, Roberts JA, Medley GF, Duckworth GJ, Lai R, Ebrahim S: Systematic review of isolation policies in the hospital management of methicillin-resistant Staphylococcus aureus: a review of the literature with epidemiological and economic modelling. Health Technol Assess. 2003, 7 (39): 1-194.View ArticlePubMedGoogle Scholar
- King AA, Ionides EL, Breto CM, Ellner S, Kendall B, Wearing H, Ferrari MJ, Lavine M, Reuman DC: pomp: statistical inference for partially observed Markov processes (R package). 2010, http://pomp.r-forge.r-project.org/,Google Scholar
- R Development Core Team: A Language and Environment for Statistical Computing. 2012, Vienna, Austria: R Foundation for Statistical Computing, http://www.R-project.org/,Google Scholar
- Gillespie DT: Exact stochastic simulation of coupled chemical-reactions. J Phys Chem. 1977, 81 (25): 2340-2361. 10.1021/j100540a008.View ArticleGoogle Scholar
- Ionides EL, Breto C, King AA: Inference for nonlinear dynamical systems. Proc Natl Acad Sci USA. 2006, 103 (49): 18438-18443. 10.1073/pnas.0603181103.View ArticlePubMedPubMed CentralGoogle Scholar
- Raue A, Kreutz C, Maiwald T, Bachmann J, Schilling M, Klingmuller U, Timmer J: Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood. Bioinformatics. 2009, 25 (15): 1923-1929. 10.1093/bioinformatics/btp358.View ArticlePubMedGoogle Scholar
- Fankhauser C, Zingg W, Francois P, Dharan S, Schrenzel J, Pittet D, Harbarth S: Surveillance of extended-spectrum-beta-lactamase-producing Enterobacteriaceae in a Swiss tertiary care hospital. Swiss Med Wkly. 2009, 139 (51–52): 747-751.PubMedGoogle Scholar
- Harris AD, Kotetishvili M, Shurland S, Johnson JA, Morris JG, Nemoy LL, Johnson JK: How important is patient-to-patient transmission in extended-spectrum beta-lactamase Escherichia coli acquisition. Am J Infect Control. 2007, 35 (2): 97-101. 10.1016/j.ajic.2006.09.011.View ArticlePubMedGoogle Scholar
- Hilty M, Betsch BY, Bogli-Stuber K, Heiniger N, Stadler M, Kuffer M, Kronenberg A, Rohrer C, Aebi S, Endimiani A: Transmission dynamics of extended-spectrum beta-lactamase-producing Enterobacteriaceae in the tertiary care hospital and the household setting. Clin Infect Dis. 2012, 55 (7): 967-975. 10.1093/cid/cis581.View ArticlePubMedPubMed CentralGoogle Scholar
- Donskey CJ: Antibiotic regimens and intestinal colonization with antibiotic-resistant Gram-negative bacilli. Clin Infect Dis. 2006, 43 (Suppl 2): S62-S69.View ArticlePubMedGoogle Scholar
- Ben-Ami R, Schwaber MJ, Navon-Venezia S, Schwartz D, Giladi M, Chmelnitsky I, Leavitt A, Carmeli Y: Influx of extended-spectrum beta-lactamase-producing Enterobacteriaceae into the hospital. Clin Infect Dis. 2006, 42 (7): 925-934. 10.1086/500936.View ArticlePubMedGoogle Scholar
- Thouverez M, Talon D, Bertrand X: Control of Enterobacteriaceae producing extended-spectrum beta-lactamase in intensive care units: rectal screening may not be needed in non-epidemic situations. Infect Control Hosp Epidemiol. 2004, 25 (10): 838-841. 10.1086/502305.View ArticlePubMedGoogle Scholar
- Kaier K, Mutters NT, Frank U: Bed occupancy rates and hospital-acquired infections–should beds be kept empty?. Clin Microbiol Infect. 2012, 18 (10): 941-945. 10.1111/j.1469-0691.2012.03956.x.View ArticlePubMedGoogle Scholar
- Temime L, Opatowski L, Pannet Y, Brun-Buisson C, Boëlle P-Y, Guillemot D: Peripatetic health-care workers as potential superspreaders. Proc Natl Acad Sci USA. 2009, 106 (43): 18420-18425. 10.1073/pnas.0900974106.View ArticlePubMedPubMed CentralGoogle Scholar
- Isella L, Romano M, Barrat A, Cattuto C, Colizza V, Van den Broeck W, Gesualdo F, Pandolfi E, Rava L, Rizzo C: Close encounters in a pediatric ward: measuring face-to-face proximity and mixing patterns with wearable sensors. PLoS One. 2011, 6 (2): e17144-10.1371/journal.pone.0017144.View ArticlePubMedPubMed CentralGoogle Scholar
- Ueno T, Masuda N: Controlling nosocomial infection based on structure of hospital social networks. J Theor Biol. 2008, 254 (3): 655-666. 10.1016/j.jtbi.2008.07.001.View ArticlePubMedGoogle Scholar
- Grundmann H, Hori S, Tanner G: Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms. J Clin Microbiol. 2001, 39 (11): 4190-4192. 10.1128/JCM.39.11.4190-4192.2001.View ArticlePubMedPubMed CentralGoogle Scholar
- McBryde ES, Pettitt AN, Cooper BS, McElwain DL: Characterizing an outbreak of vancomycin-resistant enterococci using hidden Markov models. J R Soc Interface. 2007, 4 (15): 745-754. 10.1098/rsif.2007.0224.View ArticlePubMedPubMed CentralGoogle Scholar
- Hollander R, Ebke M, Barck H, von Pritzbuer E: Asymptomatic carriage of Klebsiella pneumoniae producing extended-spectrum beta-lactamase by patients in a neurological early rehabilitation unit: management of an outbreak. J Hosp Infect. 2001, 48 (3): 207-213. 10.1053/jhin.2001.0997.View ArticlePubMedGoogle Scholar
- The pre-publication history for this paper can be accessed here:http://www.biomedcentral.com/1471-2334/13/187/prepub
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