Burden of illness in carbapenem-resistant Acinetobacter baumannii infections in US hospitals between 2014 and 2019
BMC Infectious Diseases volume 22, Article number: 36 (2022)
Carbapenem-resistant (CR) Acinetobacter baumannii is a concerning pathogen in the USA and worldwide.
To assess the comparative burden of CR vs carbapenem-susceptible (CS) A. baumannii, this retrospective cohort study analyzed data from adult patients in 250 US hospitals from the Premier HealthCare Database (2014–2019). The outcomes analyzed included hospital length of stay (LOS), intensive care unit (ICU) utilization, discharge status, in-hospital mortality, readmission rates and hospital charges. Logistic regression was used for univariate and multivariable assessment of the independent relationship between relevant covariates, with a focus on CR status, and in-hospital mortality.
2047 Patients with CR and 3476 patients with CS A. baumannii infections were included. CR A. baumannii was more commonly isolated in respiratory tract infections (CR 40.7% and CS 27.0%, P < 0.01), whereas CS A. baumannii was more frequently associated with bloodstream infections (CS 16.7% and CR 8.6%, P < 0.01). Patients with CR A. baumannii infections had higher in-hospital (CR 16.4% vs CS 10.0%; P < 0.01) and 30-day (CR 32.2% vs CS 21.6%; P < 0.01) mortality compared to those with CS infections. After adjusting for age, sex, admission source, infection site, comorbidities, and treatment with in vitro active antibiotics within 72 h, carbapenem resistance was independently associated with increased mortality (adjusted odds ratio 1.42 [95% confidence interval 1.15; 1.75], P < 0.01). CR infections were also associated with increases in hospital length of stay (CR 11 days vs CS 9 days; P < 0.01), rate of intensive care unit utilization (CR 62.3% vs CS 45.1%; P < 0.01), rate of readmission with A. baumannii infections (CR 17.8% vs CS 4.0%; P < 0.01) and hospital charges.
These data suggest that the burden of illness is significantly greater for patients with CR A. baumannii infections and are at higher risk of mortality compared with CS infections in US hospitals.
Acinetobacter baumannii has become a concerning nosocomial pathogen that can lead to serious infections including nosocomial pneumonia, bloodstream infection, skin and skin structure infection, and urinary tract infection [1, 2]. A. baumannii is an opportunistic, nonfermenting Gram-negative rod and its capability for long-term survival and antimicrobial resistance increases the risk of colonization and infection, particularly in the hospital setting [2, 3].
A small retrospective matched cohort study conducted in the USA in the early 2000s demonstrated that the presence of multidrug-resistant (MDR) A. baumannii infections in hospitalized patients was associated with increased length of stay in both the hospital and intensive care unit (ICU) compared with susceptible A. baumannii infections or noninfected hospitalized patients . However, this study failed to demonstrate a significant impact on mortality with MDR A. baumannii versus non-MDR A. baumannii . With the increased use of carbapenems, a large proportion of A. baumannii have become resistant to carbapenems in the USA and globally [1, 5,6,7]. Carbapenem-resistant (CR) A. baumannii remains an urgent threat in the USA according to the 2019 Centers for Disease Control and Prevention (CDC) antimicrobial resistance status report . Previous studies have shown that CR A. baumannii may be associated with poor outcomes [9,10,11,12]. The mortality rates in publications over the past two decades for patients with CR, MDR, or extensively drug-resistant A. baumannii infections have ranged between 24 and 83% globally, and patients with multiple comorbidities have a particularly high risk of mortality due to CR A. baumannii infection [13, 14]. Despite these findings, contemporary data assessing the comparative burden of illness and impact on outcomes of infections due to CR versus carbapenem-susceptible (CS) infections remain limited.
The objective of the current retrospective study was to evaluate the burden of illness with regard to mortality, hospitalization, ICU utilization, discharge status, and readmission in patients infected with CR versus CS A. baumannii based on a large US hospital-based healthcare database over a five-year period between 2014 and 2019.
Study design and eligibility
This was a retrospective cohort analysis of anonymized patient data from 250 US hospitals with microbiological data for A. baumannii in the Premier Healthcare Database between 1st January 2014 and 30th June 2019.
Hospitalized adult patients were eligible for inclusion in the current analysis if they had isolation of A. baumannii at various infection sites during the study period, had microbiological susceptibility testing to the carbapenems performed, and received Gram-negative antibiotic treatment within the period of − 2 and + 3 days of the index culture to minimize the inclusion of potential colonizers (Fig. 1).
Patients were excluded from the analysis if they did not have A. baumannii isolated from an index culture, if they were treated in the outpatient setting, were less than 18 years of age, had cystic fibrosis, or did not have a carbapenem susceptibility test or the susceptibility test results were noninterpretable (Fig. 1).
Following Clinical and Laboratory Standards Institute breakpoints , the susceptibility to doripenem, imipenem, or meropenem was determined from the patient’s medical chart in order to stratify patients by carbapenem susceptibility status. A. baumannii was defined as carbapenem resistant (CR) if it was resistant or displayed intermediate resistance to any of these three carbapenems. A. baumannii was defined as carbapenem susceptible (CS) if it was susceptible to all carbapenems tested (excluding ertapenem). Because patients could have had multiple infections during the study period, the index culture and respective study group were based on the presence or absence of a CR A. baumannii infection occurring at any time within the study period. If patients had any CR A. baumannii infection during the study period, they were included in the CR cohort and the index culture was the first culture positive for CR A. baumannii. If patients only had CS A. baumannii isolated, they were included in the CS group and the index culture was the first culture positive for CS A. baumannii during the study period. The index hospitalization was defined as the hospitalization associated with the index culture. Each patient was only included once in the analysis.
The infection site was categorized as blood (bloodstream infection), respiratory (respiratory tract infection), urine (urinary tract infection), wound, or other. If A. baumannii was isolated from multiple specimens from the same patient during the index hospitalization, site of infection was defined as the site from which the first positive culture was obtained on the index culture day.
The following baseline characteristics were analyzed: demographics (age [years], sex, and race), admission source (nonhealthcare or healthcare facilities), comorbidities, and site of A. baumannii infection (blood, respiratory, urine, wound or other). The main outcome parameters included all-cause in-hospital mortality, overall hospital length of stay (LOS) defined as the number of days from admission to discharge, and infection-associated LOS defined as the number of days from index culture date to discharge.
Other parameters included ICU admission during index hospitalization, ICU-associated LOS, infection-associated ICU utilization, infection-associated ICU-LOS, and discharge status (i.e. death, discharged to home, transferred to another institution or hospice, and other). We also assessed hospital charges related to the total duration of hospitalization, the duration of ICU stay, and infection-associated ICU stay, when applicable.
Kaplan–Meier analysis for survival probability by CR status was also performed. The rates of readmission due to any cause, with any Gram-negative organism isolated, or with repeat A. baumannii isolated during the readmission were analyzed for patients discharged alive from the index hospitalization.
Descriptive statistics were assessed between patient groups, including n (%) for categorical variables and mean (standard deviation [SD]) and median (interquartile range [Q1–Q3]) for continuous variables. Univariate comparisons related to baseline characteristics and outcomes between CR and CS patients were conducted using χ2 test for categorical variables, a Student’s t test for mean values, or a Wilcoxon rank sum test for median values for continuous variables. A Kaplan–Meier analysis was conducted to analyze the days between index culture date and death date during the index hospitalization. Log-rank P value of < 0.05 was used for determining the statistically significant difference between CR and CS group in the probability of death at any time point.
In order to determine the independent impact of carbapenem-resistance on in-hospital mortality, crude and adjusted Odds Ratio (OR) and their 95% confidence intervals based on normal approximation (Wald) method were calculated using univariate and multivariable logistic regression. Variables included in the multivariable logistic regression were selected based on P value < 0.1 in the bivariate analysis of each variable and CR status.
The patient information was anonymized and deidentified prior to analysis. Because this study used already existing fully de-identified data, it was exempt from ethics review under US 45 CFR 46.104(d)(4) .
Of 15,184 screened hospital episodes with a positive culture for A. baumannii from any infection site during the study period, a total of 5523 patients were included in the analysis (Fig. 1). Of these, 2047 (37.1%) patients had CR and 3476 (62.9%) had CS A. baumannii (Table 1). Patients in the CR A. baumannii cohort were older (median 63 years vs 60 years; P < 0.01) and less likely to be male (58.9% vs 62.4%; P = 0.01) when compared with the CS A. baumannii cohort, respectively (Table 1).
The median Charlson Comorbidity Index score of patients with CR and CS infections were equivalent (3 vs 3), although higher scores were more frequent in patients with CR infections (Table 1). In line with this, patients with CR infections were more likely to have any comorbid condition (92.9% vs 85.6%; P < 0.01) and had higher frequencies of various comorbidities, including diabetes (52.9% vs 42.4%, P < 0.01), chronic pulmonary disease (38.1% vs 29.3%, P < 0.01), renal disease (37.7% vs 31.0%, P < 0.01), congestive heart failure (35.4% vs 27.4%, P < 0.01), and hemiplegia or paraplegia (21.6% vs 11.1%, P < 0.01) than patients with CS A. baumannii infections (Table 1).
Overall A. baumannii was most frequently isolated from wounds (35.7%), followed by the respiratory tract (32.1%), blood (13.7%), urine (12.3%), or other sources (6.3%) (Table 1; Additional file 1: Fig. S1). The distribution of CR and CS A. baumannii differed significantly (P < 0.01) by site. Respiratory tract infections were more common with CR isolates (40.7% vs 27.0%, P < 0.01), while CS isolates were more common in bloodstream infections (CR 8.6% vs CS 16.7%, P < 0.01). CR and CS A. baumannii had been found in similar proportions in urine (CR 11.4% and CS 12.9%, P = 0.10) and wounds (CR 33.9% and CS 36.7%, P = 0.03) (Table 1; Additional file 1: Fig. S1).
Patients with CR infections were more likely to be transferred from another hospital/facility (27.4% vs 16.6%, P < 0.01), or skilled-nursing or intermediate care facility (11.6% vs 3.1%, P < 0.01). Approximately half of CS A. baumannii were detected in the index culture on the day prior to or same day of hospital admission (55.4%), while this rate was 38.6% for CR A. baumannii (P < 0.01). CR patients were more likely to have a nosocomial origin (> 3 days after hospital admission) of their pathogen (33.4% vs 24.9%; P < 0.01) (Table 1).
Length of stay and ICU utilization
In CR A. baumannii infections, median LOS was 2 days longer (11 days vs 9 days; P < 0.01) and median infection-associated LOS was 1 day longer (9 days vs 8 days; P < 0.01) than in CS A. baumannii infections (Table 2). Patients with CR A. baumannii infections were more often admitted to the ICU for any reason (62.3% vs 45.1%; P < 0.01), and to have an index culture during the ICU stay (45.3% vs 33.3%; P < 0.01) than patients with CS A. baumannii infections (Table 2). There was no difference in median ICU LOS (CR 6 vs CS 6, P = 0.98) or infection-associated ICU LOS (CR 5 vs CS 5, P = 0.86) between CR and CS A. baumannii infections. The overall LOS charges and infection-associated LOS charges were significantly higher for CR infections than for CS infections (Additional file 2: Table S1). ICU-LOS charges and infection-associated ICU-LOS charges were similar between CR and CS A. baumannii infections (Additional file 2: Table S1).
Mortality and discharge status
Patients with CR A. baumannii infections had higher in-hospital mortality (16.4% vs 10.0%; P < 0.01). There was also an increased mortality in patients with CR infections at Day 30 (32.2% vs 21.6%; P < 0.01) and Day 60 (49.8% vs 31.2%; P < 0.01). Based on the Kaplan–Meier analysis, patients with CR A. baumannii infections had a significantly higher probability of dying than those with CS A. baumannii infections (log-rank P < 0.0001) (Fig. 2). Patients with CR A. baumannii infections were significantly less likely to be discharged home (16.2% vs 47.8%) and significantly more likely to be discharged/transferred to another facility (61.9% vs 36.1%) than patients with CS A. baumannii infections (P < 0.01, Table 2). Patients who were admitted to hospital from a nonhealthcare facility point of origin were less likely to be discharged home if they had CR infections (19.9%) than if they had CS infections (51.3%) (P < 0.01).
Among patients with CR A. baumannii infections, the highest mortality rate was observed for bloodstream infections (40.9%; Table 3) followed by respiratory tract infections (21.9%), while mortality was 9.3% for patients with urinary tract infections and 6.6% for those with wound infections (Table 3). For patients with CS A. baumannii respiratory tract infections, a mortality rate of 23.2% was found, but the rate was only 12.1% for patients with bloodstream infections (Table 3). Higher mortality rates for CR than CS A. baumannii infections was observed in bloodstream, urinary tract, wound, and other types of infections, while mortality rates were similar in patients with respiratory tract infections. Overall, patients were at higher risk of mortality if they were admitted to the ICU during the index hospitalization (CR infections: 23.3% with ICU vs 5.1% without ICU; CS infections: 18.9% with ICU vs 2.6% without ICU) (Additional file 3: Table S2). The difference in mortality rates between CR and CS infections based on ICU status was consistent across infection sites (Additional file 3: Table S2).
Table 4 displays the association between covariates identified using bivariate analysis (Additional file 3: Table S3) and in-hospital mortality in unadjusted and adjusted regression models. Presence of CR was associated with an increased risk of death in the unadjusted analysis (unadjusted OR: 1.77; 95% confidence interval: 1.51; 2.08; P < 0.01). After controlling for age, race, comorbidities, site of infection, admission source, and receipt of antibiotics with in vitro activity within 72 h of index culture, CR A. baumannii was independently associated with an increased risk of in-hospital mortality (adjusted OR: 1.42 [1.15; 1.75], P < 0.01).
There was no difference in rates of overall readmission due to any cause between patients in the CR and CS A. baumannii cohorts (CR 58.4% vs CS 56.8%) who were alive at discharge. Compared with patients with CS A. baumannii infections, the readmission with any Gram-negative organism isolated (CR 36.4% vs CS 22.2%; P < 0.01) and with A. baumannii isolated (CR 17.8% vs CS 4.0%; P < 0.01) were markedly higher for patients with CR infections (Additional file 5: Table S4, Additional file 6: Table S5). The difference in readmission rates between patients in the CR and CS A. baumannii cohorts was consistent across all infection sites (Additional file 6: Table S5).
The current analysis provides information on the burden of illness due to CR versus CS A. baumannii infections among over 5000 hospitalized patients across 250 hospitals with microbiology data based on the Premier HealthCare Database between 2014 and 2019. Outcomes in patients with CR A. baumannii infections were worse than in those with CS infections. Patients with CR infections had an increased in-hospital mortality, increased length of overall hospital and infection-associated stay, a lower proportion of survivors being discharged home, and more frequent readmissions with isolation of the same pathogen. Increased mortality with CR infections persisted even after adjusting for other factors. Interestingly, despite more frequent ICU admission during index hospitalization, the length of ICU stay and ICU-related hospital charges were similar between CR and CS A. baumannii infections.
Overall, the absolute difference in in-hospital mortality rates between CR and CS infections was approximately 6% (CR 16% vs CS 10%). However, the Kaplan–Meier analysis suggested that long-term probability of survival among patients with CR infections decreased at a faster rate than among those with CS infections. We also found that the 30-day and 60-day mortality rates were also increased for patients with CR A. baumannii infections (CR 32.2% vs CS 21.6% at Day 30, and CR 49.8% vs CS 31.2% at Day 60). Several studies have shown a higher risk of mortality among patients with CR A. baumannii infections, particularly for infections occurring in the bloodstream and respiratory tract , with rates approaching ~ 50–60% globally. In the current study, the highest mortality rate in CR A. baumannii was found in bloodstream infections (> 40%), followed by respiratory tract infections (22%).
The most frequent infection sites among CR infections were the respiratory tract (> 40%) and wounds (> 30%). Most patients in this study had at least one comorbidity. The most frequently observed conditions were diabetes, chronic respiratory disease, renal disease, and congestive heart failure. Approximately 40% of CR infections and 20% of CS infections were admitted from a healthcare facility/origin. While the majority of infections were acquired in the first 48 h of hospitalization in both groups (58.6% for CR vs 69.8% for CS), there was a clear trend of later onset for CR isolates (P < 0.01), suggesting that CR infections were more likely than CS infections to be nosocomial in origin. Despite improved prevention efforts in US healthcare settings and hospitals, a high rate of hospital-acquired CR A. baumannii infections has also recently been shown in a large patient cohort .
A large proportion of patients with CR infections had a stay in ICU and had their index culture taken during ICU stay more frequently than those with CS infections. This suggests a high risk of acquiring CR A. baumannii during an ICU stay, which is consistent with previous reports . This is an important finding as there was increased mortality when patients had an ICU stay during index hospitalization, which was observed among both CR and CS infections. A previous US study assessing patients in the ICU with bloodstream infections due to Acinetobacter spp. had suggested that inappropriate antibiotic use, particularly for CR Acinetobacter spp., was strongly associated with increased mortality risk . Interestingly, in this analysis, no association between receipt of in vitro active antibiotics within the first 72 h after culture collection and mortality was demonstrated, even though this occurred with four times greater frequency (61% vs 15%) than in patients with CS isolates. While this analysis was not intended to address the impact of active therapy on outcomes, potential reasons for this unexpected finding include the inclusion of patients presenting with a wide degree of initial severity of illness, the large proportion of patients with less severe infection types (i.e., wound and urine), or the inferior definitive therapy options available for the treatment of carbapenem-resistant A. baumannii, given the extensively drug-resistant nature of most isolates.
Compared with CS patients, CR patients incurred significantly higher charges for overall LOS and infection-associated LOS, but similar charges for ICU-LOS and infection associated ICU-LOS. This may indicate that infections increased the overall hospital burden. The increased LOS and infection-associated LOS may explain the higher amount of charges for CR infections in general. Because ICU-associated LOS was not significantly different between CR and CS infections, it may be the explanation for similar charges for ICU stay by hospitals or higher mortality in CR patients resulted in a short ICU-LOS.
Readmission among patients surviving the index hospitalization may be linked to infectious or noninfectious causes because comorbidities were common in all patients. The overall readmission rates were similar between CR and CS infections. However, CR patients were more likely to be readmitted and have isolation of a Gram-negative organism, or with A. baumannii specifically, which may suggest suboptimal antibiotic treatment during the index hospitalization and/or persistence of pathogens. Further investigation into optimal treatment strategies for A. baumannii are clearly warranted.
One limitation of the current analysis is that specific antibiotic regimens were not evaluated and therefore an association between different regimens and patient outcomes was not assessed. Further analyses are required to determine which antibiotic regimens are optimal for the treatment of A. baumannii infections and whether agent selection can positively impact mortality, LOS, and/or readmission rates. An additional limitation is that infections were defined in this analysis by the type of culture sample and the administration of antibiotics at the time of that index culture. While the prescription of antibiotics during the 48–72-h window surrounding the index culture is highly suggestive of infection, whether there was an infection at the culture site and/or whether A. baumannii was considered the primary pathogen cannot be ascertained from such an analysis.
Patients with CR A. baumannii infections had an increased disease burden and higher rate of nosocomial infections, increased LOS and infection-associated LOS, more frequent ICU admission, and higher readmission rates than patients with CS infections. Mortality was also significantly higher for CR A. baumannii infections, particularly among those with bloodstream infections.
Availability of data and materials
This study is conducted using an anonymous, commercially available secondary healthcare database called Premier Healthcare Database that meets the US HIPPA requirement. The data is not sharable per our license agreement with the data owner.
Charlson comorbidity index
Centers for Disease Control and Prevention
Intensive care unit
Length of stay
Skilled nursing facility
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Editorial support was provided by Highfield, Oxford, United Kingdom, sponsored by Shionogi Inc., Florham Park, NJ, USA.
The work was supported by Shionogi Inc., Florham Park, NJ, USA. The funding body participated in the design of the study, statistical analysis plan, data analysis, and interpretation of the data. No funding to the authors was provided for the preparation of the manuscript.
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Distribution of site of carbapenem resistant (CR) or carbapenem susceptible (CS) Acinetobacter baumannii infections in hospitalized patients.
Charges associated with length of stay and intensive care unit utilization
Discharge status of patients with Acinetobacter baumannii infections, stratified by carbapenem susceptibility status, infection site, and intensive care unit stay.
Univariate analysis for patient characteristics, infection-associated ICU utilization, carbapenem susceptibility status, and administration of active or inactive antibiotics for in-hospital mortality.
Readmission rates of patients with Acinetobacter baumannii infections for survivors of index hospitalization, stratified by carbapenem susceptibility status, discharge location, and infectious agent.
Readmission rates of patients with Acinetobacter baumannii infections for survivors of index hospitalization, stratified by carbapenem susceptibility status, site of infection, and infectious agent.
Algorithm to impute antibiotic susceptibility for Acinetobacter baumannii without susceptibility testing result for treatment given within 72 h of index culture.
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Pogue, J.M., Zhou, Y., Kanakamedala, H. et al. Burden of illness in carbapenem-resistant Acinetobacter baumannii infections in US hospitals between 2014 and 2019. BMC Infect Dis 22, 36 (2022). https://doi.org/10.1186/s12879-021-07024-4