Dong E, Du H, Gardner L. An interactive web-based dashboard to track COVID-19 in real time. Lancet Infect Dis. 2020; 20(5):533–4. https://doi.org/10.1016/S1473-3099(20)30120-1.
Article
CAS
Google Scholar
Di Domenico L, Pullano G, Sabbatini CE, Boëlle P-Y, Colizza V. Impact of lockdown on COVID-19 epidemic in île-de-france and possible exit strategies. BMC Med. 2020; 18(1):240. https://doi.org/10.1186/s12916-020-01698-4.
Article
CAS
Google Scholar
Prem K, Liu Y, Russell TW, Kucharski AJ, Eggo RM, Davies N, Flasche S, Clifford S, Pearson CAB, Munday JD, Abbott S, Gibbs H, Rosello A, Quilty BJ, Jombart T, Sun F, Diamond C, Gimma A, van Zandvoort K, Funk S, Jarvis CI, Edmunds WJ, Bosse NI, Hellewell J, Jit M, Klepac P. The effect of control strategies to reduce social mixing on outcomes of the COVID-19 epidemic in Wuhan, China: a modelling study. Lancet Publ Health. 2020:261–70. https://doi.org/10.1016/S2468-2667(20)30073-.
Zhang J, Litvinova M, Liang Y, Wang Y, Wang W, Zhao S, Wu Q, Merler S, Viboud C, Vespignani A, Ajelli M, Yu H. Changes in contact patterns shape the dynamics of the COVID-19 outbreak in China. Science. 2020. https://doi.org/10.1126/science.abb8001.
Riccardo F, Ajelli M, Andrianou X, Bella A, Del Manso M, Fabiani M, Bellino S, Boros S, Mateo Urdiales A, Marziano V, Rota MC, Filia A, D extquoterightAncona FP, Siddu A, Punzo O, Trentini F, Guzzetta G, Poletti P, Stefanelli P, Castrucci MR, Ciervo A, Di Benedetto C, Tallon M, Piccioli A, Brusaferro S, Rezza G, Merler S, Pezzotti P. Epidemiological characteristics of COVID-19 cases in italy and estimates of the reproductive numbers one month into the epidemic. medRxiv. 2020. https://doi.org/10.1101/2020.04.08.20056861.
Ferguson NM, Laydon D, Nedjati-Gilani G, et al.Impact of non-pharmaceutical interventions (npis) to reduce COVID-19 mortality and healthcare demand. 2020. https://doi.org/10.25561/77482.
Coronavirus: The world in lockdown in maps and charts. 2020. https://www.bbc.com/news/world-52103747. Accessed 24 Apr 2021.
Data on country response measures to COVID-19 (ECDC). 2020. https://www.ecdc.europa.eu/en/publications-data/download-data-response-measures-covid-19. Accessed 24 Apr 2021.
Herzog SA, De Bie J, Abrams S, Wouters I, Ekinci E, Patteet L, Coppens A, De Spiegeleer S, Beutels P, Van Damme P, Hens N, Theeten H. Seroprevalence of igg antibodies against sars coronavirus 2 in Belgium - a serial prospective cross-sectional nationwide study of residual samples. medRxiv. 2021. https://doi.org/10.1101/2020.06.08.20125179.
Aleta A, Martin-Corral D, Pastore y Piontti A, Ajelli M, Litvinova M, Chinazzi M, Dean NE, Halloran ME, Longini IM, Merler S, Pentland A, Vespignani A, Moro E, Moreno Y. Modeling the impact of social distancing, testing, contact tracing and household quarantine on second-wave scenarios of the COVID-19 epidemic. medRxiv. 2020. https://doi.org/10.1101/2020.05.06.20092841.
Coletti P, Libin P, Petrof O, Abrams S, Faes C, Kuylen E, Wambua J, Willem L, the SIMID COVID-19 team, Beutels P, Hens N. covid-19 report on a meta-population model for Belgium: a firststatus report. 2020. https://www.uhasselt.be/Images/DSI/report_meta.pdf/. Accessed 24 Apr 2021.
Luca GD, Kerckhove KV, Coletti P, Poletto C, Bossuyt N, Hens N, Colizza V. The impact of regular school closure on seasonal influenza epidemics: a data-driven spatial transmission model for Belgium. BMC Infect Dis. 2018; 18(1):1–16. https://doi.org/10.1186/s12879-017-2934-3.
Article
Google Scholar
Willem L, Hoang VT, Funk S, Coletti P, Beutels P, Hens N. SOCRATES: an online tool leveraging a social contact data sharing initiative to assess mitigation strategies for COVID-19. BMC Res Notes. 2020; 13(1):293. https://doi.org/10.1186/s13104-020-05136-9.
Article
CAS
Google Scholar
SocRates Tool. 2020. http://www.socialcontactdata.org/socrates/. Accessed 24 Apr 2021.
Kifle YW, Goeyvaerts N, Van Kerckhove K, Willem L, Kucharski A, Faes C, Leirs H, Hens N, Beutels P. Animal ownership and touching enrich the context of social contacts relevant to the spread of human infectious diseases. PLOS ONE. 2015; 10(7):1–13. https://doi.org/10.1371/journal.pone.0133461.
Article
Google Scholar
Willem L, Van Kerckhove K, Chao DL, Hens N, Beutels P. A nice day for an infection? weather conditions and social contact patterns relevant to influenza transmission. PLOS ONE. 2012; 7(11):1–7. https://doi.org/10.1371/journal.pone.0048695.
Article
Google Scholar
Hoang TV, Coletti P, Kifle YW, Kerckhove KV, Vercruysse S, Willem L, Beutels P, Hens N. Close contact infection dynamics over time: insights from a second large-scale social contact survey in flanders, Belgium, in 2010-2011. BMC Infect Dis. 2021; 21(1):274. https://doi.org/10.1186/s12879-021-05949-4.
Article
Google Scholar
StatBel, the Belgian statistical office. 2020. https://statbel.fgov.be/en. Accessed 24 Apr 2021.
Sciensano, Covid-19 Belgium Epidemiological Situation. 2020. https://datastudio.google.com/embed/u/0/reporting/c14a5cfc-cab7-4812-848c-0369173148ab/page/tpRKB. Accessed 24 Apr 2021.
Van Kerckhove K, Hens N, Edmunds WJ, Eames KTD. The Impact of Illness on Social Networks: Implications for Transmission and Control of Influenza. Am J Epidemiol. 2013; 178(11):1655–62. https://doi.org/10.1093/aje/kwt196.
Article
Google Scholar
Guan W-J, Ni Z-Y, Hu Y, Liang W-H, Ou C-Q, He J-X, Liu L, Shan H, Lei C-L, Hui DSC, Du B, Li L-J, Zeng G, Yuen K-Y, Chen R-C, Tang C-L, Wang T, Chen P-Y, Xiang J, Li S-Y, Wang J-L, Liang Z-J, Peng Y-X, Wei L, Liu Y, Hu Y-H, Peng P, Wang J-M, Liu J-Y, Chen Z, Li G, Zheng Z-J, Qiu S-Q, Luo J, Ye C-J, Zhu S-Y, Zhong N-S. Clinical characteristics of coronavirus disease 2019 in China. N Engl J Med. 2020; 382(18):1708–20. https://doi.org/10.1056/NEJMoa2002032.
Article
CAS
Google Scholar
Hellewell J, Abbott S, Gimma A, Bosse NI, Jarvis CI, Russell TW, Munday JD, Kucharski AJ, Edmunds WJ, Sun F, Flasche S, Quilty BJ, Davies N, Liu Y, Clifford S, Klepac P, Jit M, Diamond C, Gibbs H, van Zandvoort K, Funk S, Eggo RM. Feasibility of controlling COVID-19 outbreaks by isolation of cases and contacts. Lancet Glob Health. 2020; 8(4):488–96. https://doi.org/10.1016/S2214-109X(20)30074-7.
Article
Google Scholar
Ludvigsson JF. Systematic review of covid-19 in children shows milder cases and a better prognosis than adults. Acta Paediatr. 2020; 109(6):1088–95. https://doi.org/10.1111/apa.15270.
Article
CAS
Google Scholar
Mizumoto K, Omori R, Nishiura H. Age specificity of cases and attack rate of novel coronavirus disease (COVID-19). medRxiv. 2020. https://doi.org/10.1101/2020.03.09.20033142.
Wallinga J, Teunis P, Kretzschmar M. Using data on social contacts to estimate age-specific transmission parameters for respiratory-spread infectious agents. Am J Epidemiol. 2006; 164(10):936–44.
Article
Google Scholar
Hoang T, Coletti P, Melegaro A, Wallinga J, Grijalva CG, Edmunds JW, Beutels P, Hens N. A Systematic Review of Social Contact Surveys to Inform Transmission Models of Close-contact Infections. Epidemiology. 2019; 30(5):723–36. https://doi.org/10.1097/EDE.0000000000001047.
Article
Google Scholar
Mossong J, Hens N, Jit M, Beutels P, Auranen K, Mikolajczyk R, Massari M, Salmaso S, Tomba GS, Wallinga J, Heijne J, Sadkowska-Todys M, Rosinska M, Edmunds WJ. Social contacts and mixing patterns relevant to the spread of infectious diseases. PLOS Med. 2008; 5(3):1–1. https://doi.org/10.1371/journal.pmed.0050074.
Article
Google Scholar
Boast A, Munro A, Goldstein H. An evidence summary of paediatric COVID-19 literature. 2020. https://doi.org/10.31440/DFTB.24063.
Bi Q, Wu Y, Mei S, Ye C, Zou X, Zhang Z, Liu X, Wei L, Truelove SA, Zhang T, Gao W, Cheng C, Tang X, Wu X, Wu Y, Sun B, Huang S, Sun Y, Zhang J, Ma T, Lessler J, Feng T. Epidemiology and transmission of COVID-19 in 391 cases and 1286 of their close contacts in Shenzhen, China: a retrospective cohort study. Lancet Infect Dis. 2020; 3099(20):1–9. https://doi.org/10.1016/S1473-3099(20)30287-5.
Google Scholar
Zimmermann P, Curtis N. Coronavirus infections in children including COVID-19: An overview of the epidemiology, clinical features, diagnosis, treatment and prevention options in children. Pediatr Infect Dis J. 2020; 39(5):355–68. https://doi.org/10.1097/INF.0000000000002660.
Article
Google Scholar
Shahriari B, Swersky K, Wang Z, Adams RP, de Freitas N. Taking the human out of the loop: A review of bayesian optimization. Proc IEEE. 2016; 104(1):148–75. https://doi.org/10.1109/JPROC.2015.2494218.
Article
Google Scholar
Jiménez J, Ginebra J. pygpgo: Bayesian optimization for python. J Open Source Softw. 2017; 2(19):431. https://doi.org/10.21105/joss.00431.
Article
Google Scholar
Kucirka LM, Lauer SA, Laeyendecker O, Boon D, Lessler J. Variation in false-negative rate of reverse transcriptase polymerase chain reaction–based sars-cov-2 tests by time since exposure. Ann Intern Med. https://doi.org/10.7326/M20-1495.
Kucharski AJ, Klepac P, Conlan A, Kissler SM, Tang M, Fry H, Gog J, Edmunds J. Effectiveness of isolation, testing, contact tracing and physical distancing on reducing transmission of sars-cov-2 in different settings. medRxiv. 2020. https://doi.org/10.1101/2020.04.23.20077024.
Jit M, Jombart T, Nightingale ES, Endo A, Abbott S, LSHTM Centre for Mathematical Modelling of Infectious Diseases COVID-19 Working Group, Edmunds WJ. Estimating number of cases and spread of coronavirus disease (COVID-19) using critical care admissions, united kingdom, february to march 2020. Eurosurveillance. 2020; 25(18). https://doi.org/10.2807/1560-7917.ES.2020.25.18.2000632.
Zhao S, Lin Q, Ran J, Musa SS, Yang G, Wang W, Lou Y, Gao D, Yang L, He D, Wang MH. Preliminary estimation of the basic reproduction number of novel coronavirus (2019-ncov) in China, from 2019 to 2020: A data-driven analysis in the early phase of the outbreak. Int J Infect Dis. 2020; 92:214–7. https://doi.org/10.1016/j.ijid.2020.01.050.
Article
CAS
Google Scholar
Liu Y, Gayle AA, Wilder-Smith A, Rocklöv J. The reproductive number of COVID-19 is higher compared to SARS coronavirus. J Travel Med. 2020; 27(2). https://doi.org/10.1093/jtm/taaa021.
Jarvis CI, Zandvoort KV, Gimma A, Prem K, working Group CC, Klepac P, Rubin GJ, Edmunds WJ. Quantifying the impact of physical distance measures on the transmission of COVID-19 in the UK. BMC Med. 2020. https://doi.org/10.1186/s12916-020-01597-8.
Prather KA, Wang CC, Schooley RT. Reducing transmission of sars-cov-2. Science. 2020; 368(6498):1422–4. https://doi.org/10.1126/science.abc6197.
Article
CAS
Google Scholar
Ozyigit A. Understanding COVID-19 transmission: The effect of temperature and health behavior on transmission rates. Infect Dis Health. 2020. https://doi.org/10.1016/j.idh.2020.07.001.
The Grote Corona Studie. https://corona-studie.shinyapps.io/corona-studie/.
Jones TC, Mü hlemann B, Veith T, Zuchowski M, Hofmann J, Stein A, Edelmann A, Corman VM, Drosten C. An analysis of sars-cov-2 viral load by patient age. 2020. https://zoonosen.charite.de/fileadmin/user_upload/microsites/m_cc05/virologie-ccm/dateien_upload/Weitere_Dateien/analysis-of-SARS-CoV-2-viral-load-by-patient-age.pdf. Accessed 24 Apr 2021.
Held L. A discussion and reanalysis of the results reported in Jones et al (2020): "An analysis of SARS-CoV-2 viral load by patient age". 2020. https://osf.io/bkuar/. Accessed 24 Apr 2021.
Stoye J. A critical assessment of some recent work on COVID-19. 2020. http://arxiv.org/abs/2005.10237. Accessed 24 Apr 2021.
Curtis D. Children have lower sars-cov-2 viral loads than adults. Preprints. 2020. https://doi.org/10.20944/preprints202005.0367.v1.
Heavey L, Casey G, Kelly C, Kelly D, McDarby G. No evidence of secondary transmission of covid-19 from children attending school in ireland, 2020. Eurosurveillance. 2020; 25(21). https://doi.org/10.2807/1560-7917.ES.2020.25.21.2000903.
Torneri A, Libin P, Vanderlocht J, Vandamme A-M, Neyts J, Hens N. A prospect on the use of antiviral drugs to control local outbreaks of COVID-19. BMC Med. 2020; 18(1):191. https://doi.org/10.1186/s12916-020-01636-4.
Article
CAS
Google Scholar
Ferretti L, Wymant C, Kendall M, Zhao L, Nurtay A, Abeler-Dörner L, Parker M, Bonsall D, Fraser C. Quantifying sars-cov-2 transmission suggests epidemic control with digital contact tracing. Science. 2020; 368(6491). https://doi.org/10.1126/science.abb6936.
Ienca M, Vayena E. On the responsible use of digital data to tackle the COVID-19 pandemic Large-scale. Nat Med. 2020; 26(4):458. https://doi.org/10.1038/s41591-020-0823-6.
Article
Google Scholar
Coletti P, Wambua J, Gimma A, Willem L, Vercruysse S, Vanhoutte B, Jarvis CI, Van Zandvoort K, Edmunds J, Beutels P, Hens N. Comix: comparing mixing patterns in the belgian population during and after lockdown. Sci Rep. 2020; 10(1):21885. https://doi.org/10.1038/s41598-020-78540-7.
Article
CAS
Google Scholar
Willem L, Abrams S, Libin PJK, Coletti P, Kuylen E, Petrof O, Møgelmose S, Wambua J, Herzog SA, Faes C, Beutels P, Hens N. The impact of contact tracing and household bubbles on deconfinement strategies for COVID-19. Nat Commun. 2021; 12(1):1524. https://doi.org/10.1038/s41467-021-21747-7.
Article
CAS
Google Scholar
Abrams S, Wambua J, Santermans E, Willem L, Kuylen E, Coletti P, Libin P, Faes C, Petrof O, Herzog SA, Beutels P, Hens N. Modeling the early phase of the Belgium COVID-19 epidemic using a stochastic compartmental model and studying its implied future trajectories. Epidemics. 2021:100449. https://doi.org/10.1016/j.epidem.2021.100449.
Faes C, Abrams S, Van Beckhoven D, Meyfroidt G, Vlieghe E, Hens N, Belgian Collaborative, Group on COVID-19 Hospital Surveillance. Time between Symptom Onset, Hospitalisation and Recovery or Death: Statistical Analysis of Belgian COVID-19 Patients. Int J Environ Res Public Health. 2020; 17:7560. https://doi.org/10.3390/ijerph17207560.
Article
CAS
Google Scholar
Libin PJK, Willem L, Verstraeten T, Torneri A, Vanderlocht J, Hens N. Assessing the feasibility and effectiveness of household-pooled universal testing to control COVID-19 epidemics. PLOS Comput Biol. 2021; 17(3):1–22. https://doi.org/10.1371/journal.pcbi.1008688.
Article
Google Scholar
Franco N. Covid-19 Belgium: Extended seir-qd model with nursing homes and long-term scenarios-based forecasts. medRxiv. 2020. https://doi.org/10.1101/2020.09.07.20190108.
Russell T, Hellewell J, Abbott S, Golding N, Gibbs H, Jarvis C, van Zandvoort K, CMMID nCov working group, Flasche S, Eggo R, JW E, Kucharski A. Using a delay-adjusted case fatality ratio to estimate under-reporting. 2020. https://cmmid.github.io/topics/covid19/global_cfr_estimates.html. Accessed 24 Apr 2021.
Holmdahl I, Buckee C. Wrong but useful — what COVID-19 epidemiologic models can and cannot tell us. N Engl J Med. https://doi.org/10.1056/NEJMp2016822.
Den Boon S, Jit M, Brisson M, Medley G, Beutels P, White R, Flasche S, Hollingsworth TD, Garske T, Pitzer VE, Hoogendoorn M, Geffen O, Clark A, Kim J, Hutubessy R. Guidelines for multi-model comparisons of the impact of infectious disease interventions. BMC Med. 2019; 17(1):1–13. https://doi.org/10.1186/s12916-019-1403-9.
Article
CAS
Google Scholar
CoMix data. https://doi.org/10.5281/zenodo.4147585.
Lauer SA, Grantz KH, Bi Q, Jones FK, Zheng Q, Meredith HR, Azman AS, Reich NG, Lessler J. The Incubation Period of Coronavirus Disease 2019 (COVID-19) From Publicly Reported Confirmed Cases: Estimation and Application. Ann Intern Med. 2020. https://doi.org/10.7326/M20-0504.
WHO question & answer. 2020. https://www.who.int/news-room/q-a-detail/q-a-similarities-and-differences-covid-19-and-influenza. Accessed 24 Apr 2021.
Day M. Covid-19: identifying and isolating asymptomatic people helped eliminate virus in italian village. BMJ. 2020; 368. https://doi.org/10.1136/bmj.m1165.
Nishiura H, Kobayashi T, Suzuki A, Jung SM, Hayashi K, Kinoshita R, Yang Y, Yuan B, Akhmetzhanov AR, Linton NM, Miyama T. Estimation of the asymptomatic ratio of novel coronavirus infections (COVID-19). Int J Infect Dis IJID Off Publ Int Soc Infect Dis. 2020; 94:154–5. https://doi.org/10.1016/j.ijid.2020.03.020.
CAS
Google Scholar