Bao J, Thorley B, Isaacs D, Dinsmore N, Elliott EJ, McIntyre P, et al. Polio—The old foe and new challenges: an update for clinicians. J Paediatr Child Health. 2020;56:1527–32.
Article
PubMed
Google Scholar
Kew O, Pallansch M. Breaking the last chains of poliovirus transmission: progress and challenges in global polio eradication. Annu Rev Virol. 2018;5:427–51.
Article
CAS
PubMed
Google Scholar
Burns CC, Diop OM, Sutter RW, Kew OM. Vaccine-derived polioviruses. J Infect Dis. 2014;210(Suppl 1):S283-293.
Article
PubMed
Google Scholar
Combelas N, Holmblat B, Joffret M-L, Colbère-Garapin F, Delpeyroux F. Recombination between poliovirus and coxsackie A viruses of species C: a model of viral genetic plasticity and emergence. Viruses. 2011;3:1460–84.
Article
CAS
PubMed
PubMed Central
Google Scholar
Rakoto-Andrianarivelo M, Gumede N, Jegouic S, Balanant J, Andriamamonjy SN, Rabemanantsoa S, et al. Reemergence of recombinant vaccine-derived poliovirus outbreak in Madagascar. J Infect Dis. 2008;197:1427–35.
Article
CAS
PubMed
Google Scholar
Rousset D, Rakoto-Andrianarivelo M, Razafindratsimandresy R, Randriamanalina B, Guillot S, Balanant J, et al. Recombinant vaccine-derived poliovirus in Madagascar. Emerg Infect Dis. 2003;9:885–7.
Article
PubMed
PubMed Central
Google Scholar
Razafindratsimandresy R, Joffret M-L, Rabemanantsoa S, Andriamamonjy S, Heraud J-M, Delpeyroux F. Reemergence of recombinant vaccine-derived polioviruses in healthy children. Madagascar Emerg Infect Dis. 2013;19:1008–10.
Article
PubMed
Google Scholar
Madagascar: main health facilities and population density, March 2020—Madagascar. ReliefWeb. https://reliefweb.int/map/madagascar/madagascar-main-health-facilities-and-population-density-march-2020. Accessed 13 May 2022.
Randremanana R, Randrianirina F, Gousseff M, Dubois N, Razafindratsimandresy R, Hariniana ER, et al. Case-control study of the etiology of infant diarrheal disease in 14 districts in Madagascar. PLoS ONE. 2012;7:e44533.
Article
CAS
PubMed
PubMed Central
Google Scholar
Nadkarni SS, Deshpande JM. Recombinant murine L20B cell line supports multiplication of group A coxsackieviruses. J Med Virol. 2003;70:81–5.
Article
PubMed
Google Scholar
Sadeuh-Mba SA, Joffret M-L, Mazitchi A, Endegue-Zanga M-C, Njouom R, Delpeyroux F, et al. Genetic and phenotypic characterization of recently discovered enterovirus D type 111. PLoS Negl Trop Dis. 2019;13:e0007797.
Article
PubMed
PubMed Central
Google Scholar
World Health Organization. Polio laboratory manual, 4th ed. World Health Organization; 2004. https://apps.who.int/iris/handle/10665/68762. Accessed 10 Oct 2022.
Kilpatrick DR, Yang C-F, Ching K, Vincent A, Iber J, Campagnoli R, et al. Rapid group-, serotype-, and vaccine strain-specific identification of poliovirus isolates by real-time reverse transcription-PCR using degenerate primers and probes containing deoxyinosine residues. J Clin Microbiol. 2009;47:1939–41.
Article
CAS
PubMed
PubMed Central
Google Scholar
Craig ME, Robertson P, Howard NJ, Silink M, Rawlinson WD. Diagnosis of enterovirus infection by genus-specific PCR and enzyme-linked immunosorbent assays. J Clin Microbiol. 2003;41:841–4.
Article
CAS
PubMed
PubMed Central
Google Scholar
Bessaud M, Jegouic S, Joffret M-L, Barge C, Balanant J, Gouandjika-Vasilache I, et al. Characterization of the genome of human enteroviruses: design of generic primers for amplification and sequencing of different regions of the viral genome. J Virol Methods. 2008;149:277–84.
Article
CAS
PubMed
Google Scholar
Caro V, Guillot S, Delpeyroux F, Crainic R. Molecular strategy for “serotyping” of human enteroviruses. J Gen Virol. 2001;82(Pt 1):79–91.
Article
CAS
PubMed
Google Scholar
Brown BA, Maher K, Flemister MR, Naraghi-Arani P, Uddin M, Oberste MS, et al. Resolving ambiguities in genetic typing of human enterovirus species C clinical isolates and identification of enterovirus 96, 99 and 102. J Gen Virol. 2009;90(Pt 7):1713–23.
Article
CAS
PubMed
Google Scholar
Oberste MS, Maher K, Kilpatrick DR, Flemister MR, Brown BA, Pallansch MA. Typing of human enteroviruses by partial sequencing of VP1. J Clin Microbiol. 1999;37:1288–93.
Article
CAS
PubMed
PubMed Central
Google Scholar
Joffret M-L, Polston PM, Razafindratsimandresy R, Bessaud M, Heraud J-M, Delpeyroux F. Whole genome sequencing of enteroviruses species A to D by high-throughput sequencing: application for viral mixtures. Front Microbiol. 2018;9:2339.
Article
PubMed
PubMed Central
Google Scholar
Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 2018;35:1547–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gao W, Yue L, Yang T, Li H, Song X, Xie T, et al. A comparative study on biological characteristics of ten coxsackievirus A10 virus strains. Virology. 2021;555:1–9.
Article
CAS
PubMed
Google Scholar
Wang J, Liu J, Fang F, Wu J, Ji T, Yang Y, et al. Genomic surveillance of coxsackievirus A10 reveals genetic features and recent appearance of genogroup D in Shanghai, China, 2016–2020. Virol Sin. 2022. https://doi.org/10.1016/j.virs.2022.01.028.
Article
PubMed
PubMed Central
Google Scholar
Bessaud M, Razafindratsimandresy R, Nougairède A, Joffret M-L, Deshpande JM, Dubot-Pérès A, et al. Molecular comparison and evolutionary analyses of VP1 nucleotide sequences of new African human enterovirus 71 isolates reveal a wide genetic diversity. PLoS ONE. 2014;9:e90624.
Article
PubMed
PubMed Central
Google Scholar
Henquell C, Mirand A, Richter J, Schuffenecker I, Böttiger B, Diedrich S, et al. Phylogenetic patterns of human coxsackievirus B5 arise from population dynamics between two genogroups and reveal evolutionary factors of molecular adaptation and transmission. J Virol. 2013;87:12249–59.
Article
CAS
PubMed
PubMed Central
Google Scholar
Rakoto-Andrianarivelo M, Rousset D, Razafindratsimandresy R, Chevaliez S, Guillot S, Balanant J, et al. High frequency of human enterovirus species C circulation in Madagascar. J Clin Microbiol. 2005;43:242–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Laxmivandana R, Cherian SS, Yergolkar P, Chitambar SD. Genomic characterization of coxsackievirus type B3 strains associated with acute flaccid paralysis in south-western India. J Gen Virol. 2016;97:694–705.
Article
CAS
PubMed
Google Scholar
Rao CD, Yergolkar P, Shankarappa KS. Antigenic diversity of enteroviruses associated with nonpolio acute flaccid paralysis, India, 2007–2009. Emerg Infect Dis. 2012;18:1833–40.
Article
PubMed
PubMed Central
Google Scholar
Rao DC, Ananda Babu M, Raghavendra A, Dhananjaya D, Kumar S, Maiya PP. Non-polio enteroviruses and their association with acute diarrhea in children in India. Infect Genet Evol. 2013;17:153–61.
Article
PubMed
Google Scholar
Sadeuh-Mba SA, Kavunga-Membo H, Joffret M-L, Yogolelo R, Endegue-Zanga MC, Bessaud M, et al. Genetic landscape and macro-evolution of co-circulating Coxsackieviruses A and Vaccine-derived Polioviruses in the Democratic Republic of Congo, 2008–2013. PLoS Negl Trop Dis. 2019;13:e0007335.
Article
PubMed
PubMed Central
Google Scholar
Sadeuh-Mba SA, Bessaud M, Massenet D, Joffret M-L, Endegue M-C, Njouom R, et al. High frequency and diversity of species C enteroviruses in Cameroon and neighboring countries. J Clin Microbiol. 2013;51:759–70.
Article
CAS
PubMed
PubMed Central
Google Scholar
Bessaud M, Joffret M-L, Holmblat B, Razafindratsimandresy R, Delpeyroux F. Genetic relationship between cocirculating human enteroviruses species C. PLoS ONE. 2011;6:e24823.
Article
CAS
PubMed
PubMed Central
Google Scholar
Smura T, Blomqvist S, Vuorinen T, Ivanova O, Samoilovich E, Al-Hello H, et al. The evolution of Vp1 gene in enterovirus C species sub-group that contains types CVA-21, CVA-24, EV-C95, EV-C96 and EV-C99. PLoS ONE. 2014;9:e93737.
Article
PubMed
PubMed Central
Google Scholar
Muslin C, Mac Kain A, Bessaud M, Blondel B, Delpeyroux F. Recombination in enteroviruses, a multi-step modular evolutionary process. Viruses. 2019;11:E859.
Article
PubMed
Google Scholar
Brouwer L, Benschop KSM, Nguyen D, Kamau E, Pajkrt D, Simmonds P, et al. Recombination analysis of non-poliovirus members of the enterovirus C species; Restriction of recombination events to members of the same 3DPol cluster. Viruses. 2020;12:706.
Article
CAS
PubMed Central
Google Scholar
Rakoto-Andrianarivelo M, Guillot S, Iber J, Balanant J, Blondel B, Riquet F, et al. Co-circulation and evolution of polioviruses and species C enteroviruses in a district of Madagascar. PLoS Pathog. 2007;3:e191.
Article
PubMed
PubMed Central
Google Scholar
Bessaud M, Pillet S, Ibrahim W, Joffret M-L, Pozzetto B, Delpeyroux F, et al. Molecular characterization of human enteroviruses in the Central African Republic: uncovering wide diversity and identification of a new human enterovirus A71 genogroup. J Clin Microbiol. 2012;50:1650–8.
Article
PubMed
PubMed Central
Google Scholar
Faleye TOC, Adeniji JA. Enterovirus species B bias of RD cell line and its influence on enterovirus diversity landscape. Food Environ Virol. 2015;7:390–402.
Article
CAS
PubMed
Google Scholar
Marchetti GE, Gelfand HM. Use of HEP-2 cells for grouping enteroviruses. Public Health Rep (1896–1970). 1963;78:813–7.
Article
CAS
Google Scholar
Wen H-M, Chang S-S, Lu L, Tian B-J, Zhao Z-X, Zhang J, et al. Molecular typing of enteroviruses from healthy children in the border areas of Yunnan Province and Myanmar and the genetic characteristics of ECHO7 and ECHO13 in 2009. Bing Du Xue Bao. 2011;27:342–6.
PubMed
Google Scholar
Jiao MMA, Apostol LN, de Quiroz-Castro M, Jee Y, Roque V, Mapue M, et al. Non-polio enteroviruses among healthy children in the Philippines. BMC Public Health. 2020;20:167.
Article
PubMed
PubMed Central
Google Scholar
Attoh J, Obodai E, Adiku T, Odoom JK. Prevalence of human enteroviruses among apparently healthy nursery school children in Accra. Pan Afr Med J. 2014;18:66.
Article
PubMed
PubMed Central
Google Scholar
Kuramitsu M, Kuroiwa C, Yoshida H, Miyoshi M, Okumura J, Shimizu H, et al. Non-polio enterovirus isolation among families in Ulaanbaatar and Tov province, Mongolia: prevalence, intrafamilial spread, and risk factors for infection. Epidemiol Infect. 2005;133:1131–42.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ylä-Pelto J, Koskinen S, Karelehto E, Sittig E, Roivainen M, Hyypiä T, et al. Complete genome sequences of three strains of coxsackievirus A7. Genome Announc. 2013. https://doi.org/10.1128/genomeA.00146-13.
Article
PubMed
PubMed Central
Google Scholar
Grist NR. Type A7 Coxsackie (type 4 poliomyelitis) virus infection in Scotland. J Hyg (Lond). 1962;60:323–32.
Article
CAS
Google Scholar
Ranzenhofer ER, Dizon FC, Lipton MM, Steigman AJ. Clinical paralytic poliomyelitis due to Coxsackie virus group A, type 7. N Engl J Med. 1958;259:182.
Article
CAS
PubMed
Google Scholar
Bessaud M, Joffret M-L, Blondel B, Delpeyroux F. Exchanges of genomic domains between poliovirus and other cocirculating species C enteroviruses reveal a high degree of plasticity. Sci Rep. 2016;6:38831.
Article
CAS
PubMed
PubMed Central
Google Scholar
Jegouic S, Joffret M-L, Blanchard C, Riquet FB, Perret C, Pelletier I, et al. Recombination between polioviruses and co-circulating Coxsackie A viruses: role in the emergence of pathogenic vaccine-derived polioviruses. PLoS Pathog. 2009;5:e1000412.
Article
PubMed
PubMed Central
Google Scholar
Riquet FB, Blanchard C, Jegouic S, Balanant J, Guillot S, Vibet M-A, et al. Impact of exogenous sequences on the characteristics of an epidemic type 2 recombinant vaccine-derived poliovirus. J Virol. 2008;82:8927–32.
Article
CAS
PubMed
PubMed Central
Google Scholar