MC-H acknowledges support from the H2020-EXPANSE project (Horizon 2020 Grant No 874627). MC-H and BB acknowledge support from Cancer Research UK, Population Research Committee Project grant 'Mechanomics’ (Grant No 22184 to MC-H). CAD acknowledges support from the MRC Centre for Global Infectious Disease Analysis and National Institute for Health Research (NIHR) Health Protection Research Unit (HPRU). GC is supported by an NIHR Professorship. HW acknowledges support from an NIHR Senior Investigator Award and the Wellcome Trust (205456/Z/16/Z). PE is Director of the Medical Research Council (MRC) Centre for Environment and Health (MR/L01341X/1, MR/S019669/1). PE acknowledges support from Health Data Research UK (HDR UK); the NIHR Imperial Biomedical Research Centre; NIHR Health Protection Research Units in Chemical and Radiation Threats and Hazards, and Environmental Exposures and Health; the British Heart Foundation Centre for Research Excellence at Imperial College London (RE/18/4/34215); and the UK Dementia Research Institute at Imperial College London (MC_PC_17114). AJP acknowledges the support of the Biotechnology and Biological Sciences Research Council (BB/R012504/1). We thank The Huo Family Foundation for their support of our work on COVID-19.
We thank key collaborators on this work—Ipsos MORI: Kelly Beaver, Sam Clemens, Gary Welch, Nicholas Gilby, Kelly Ward, Galini Pantelidou and Kevin Pickering; Institute of Global Health Innovation at Imperial College London: Gianluca Fontana, Justine Alford; School of Public Health, Imperial College London: Eric Johnson, Rob Elliott, Graham Blakoe; Quadram Institute, Norwich, UK: Alexander J. Trotter; North West London Pathology and Public Health England (now UKHSA) for help in calibration of the laboratory analyses; Patient Experience Research Centre at Imperial College London and the REACT Public Advisory Panel; NHS Digital for access to the NHS register; the Department of Health and Social Care for logistic support.
The COVID-19 Genomics UK (COG-UK) consortium—June 2021 V.1
Funding acquisition, Leadership and supervision, Metadata curation, Project administration, Samples and logistics, Sequencing and analysis, Software and analysis tools, and Visualisation:
Dr Samuel C Robson13,84
Funding acquisition, Leadership and supervision, Metadata curation, Project administration, Samples and logistics, Sequencing and analysis, and Software and analysis tools:
Dr Thomas R Connor11,74 and Prof Nicholas J Loman43
Leadership and supervision, Metadata curation, Project administration, Samples and logistics, Sequencing and analysis, Software and analysis tools, and Visualisation:
Dr Tanya Golubchik5
Funding acquisition, Leadership and supervision, Metadata curation, Samples and logistics, Sequencing and analysis, and Visualisation:
Dr Rocio T Martinez Nunez46
Funding acquisition, Leadership and supervision, Project administration, Samples and logistics, Sequencing and analysis, and Software and analysis tools:
Dr David Bonsall5
Funding acquisition, Leadership and supervision, Project administration, Sequencing and analysis, Software and analysis tools, and Visualisation:
Prof Andrew Rambaut104
Funding acquisition, Metadata curation, Project administration, Samples and logistics, Sequencing and analysis, and Software and analysis tools:
Dr Luke B Snell12
Leadership and supervision, Metadata curation, Project administration, Samples and logistics, Software and analysis tools, and Visualisation:
Rich Livett116
Funding acquisition, Leadership and supervision, Metadata curation, Project administration, and Samples and logistics:
Dr Catherine Ludden20,70
Funding acquisition, Leadership and supervision, Metadata curation, Samples and logistics, and Sequencing and analysis:
Dr Sally Corden74 and Dr Eleni Nastouli96,95,30
Funding acquisition, Leadership and supervision, Metadata curation, Sequencing and analysis, and Software and analysis tools:
Dr Gaia Nebbia12
Funding acquisition, Leadership and supervision, Project administration, Samples and logistics, and Sequencing and analysis:
Ian Johnston116
Leadership and supervision, Metadata curation, Project administration, Samples and logistics, and Sequencing and analysis:
Prof Katrina Lythgoe5, Dr M. Estee Torok19,20 and Prof Ian G Goodfellow24
Leadership and supervision, Metadata curation, Project administration, Samples and logistics, and Visualisation:
Dr Jacqui A Prieto97,82 and Dr Kordo Saeed97,83
Leadership and supervision, Metadata curation, Project administration, Sequencing and analysis, and Software and analysis tools:
Dr David K Jackson116
Leadership and supervision, Metadata curation, Samples and logistics, Sequencing and analysis, and Visualisation:
Dr Catherine Houlihan96,94
Leadership and supervision, Metadata curation, Sequencing and analysis, Software and analysis tools, and Visualisation:
Dr Dan Frampton94,95
Metadata curation, Project administration, Samples and logistics, Sequencing and analysis, and Software and analysis tools:
Dr William L Hamilton19 and Dr Adam A Witney41
Funding acquisition, Samples and logistics, Sequencing and analysis, and Visualisation:
Dr Giselda Bucca101
Funding acquisition, Leadership and supervision, Metadata curation, and Project administration:
Dr Cassie F Pope40,41
Funding acquisition, Leadership and supervision, Metadata curation, and Samples and logistics:
Dr Catherine Moore74
Funding acquisition, Leadership and supervision, Metadata curation, and Sequencing and analysis:
Prof Emma C Thomson53
Funding acquisition, Leadership and supervision, Project administration, and Samples and logistics:
Dr Ewan M Harrison116,102
Funding acquisition, Leadership and supervision, Sequencing and analysis, and Visualisation:
Prof Colin P Smith101
Leadership and supervision, Metadata curation, Project administration, and Sequencing and analysis:
Fiona Rogan77
Leadership and supervision, Metadata curation, Project administration, and Samples and logistics:
Shaun M Beckwith 6, Abigail Murray 6, Dawn Singleton 6, Dr Kirstine Eastick 37, Dr Liz A Sheridan 98, Paul Randell 99, Dr Leigh M Jackson 105, Dr Cristina V Ariani 116 and Dr Sónia Gonçalves116
Leadership and supervision, Metadata curation, Samples and logistics, and Sequencing and analysis:
Dr Derek J Fairley 3,77, Prof Matthew W Loose 18 and Joanne Watkins74
Leadership and supervision, Metadata curation, Samples and logistics, and Visualisation:
Dr Samuel
Moses25,106
Leadership and supervision, Metadata curation, Sequencing and analysis, and Software and analysis tools:
Dr Sam Nicholls 43, Dr Matthew Bull 74 and Dr Roberto Amato116
Leadership and supervision, Project administration, Samples and logistics, and Sequencing and analysis:
Prof Darren L Smith36,65,66
Leadership and supervision, Sequencing and analysis, Software and analysis tools, and Visualisation:
Prof David M Aanensen14,116 and Dr Jeffrey C Barrett116
Metadata curation, Project administration, Samples and logistics, and Sequencing and analysis:
Dr Dinesh Aggarwal20,116,70, Dr James G Shepherd 53, Dr Martin D Curran 71 and Dr Surendra Parmar71
Metadata curation, Project administration, Sequencing and analysis, and Software and analysis tools:
Dr Matthew D Parker109
Metadata curation, Samples and logistics, Sequencing and analysis, and Software and analysis tools:
Dr Catryn Williams74
Metadata curation, Samples and logistics, Sequencing and analysis, and Visualisation:
Dr Sharon Glaysher68
Metadata curation, Sequencing and analysis, Software and analysis tools, and Visualisation:
Dr Anthony P Underwood 14,116, Dr Matthew Bashton 36,65, Dr Nicole Pacchiarini 74, Dr Katie F Loveson84 and Matthew Byott95,96
Project administration, Sequencing and analysis, Software and analysis tools, and Visualisation:
Dr Alessandro M Carabelli20
Funding acquisition, Leadership and supervision, and Metadata curation:
Dr Kate E Templeton56,104
Funding acquisition, Leadership and supervision, and Project administration:
Dr Thushan I de Silva109, Dr Dennis Wang109, Dr Cordelia F Langford116 and John Sillitoe116
Funding acquisition, Leadership and supervision, and Samples and logistics:
Prof Rory N Gunson55
Funding acquisition, Leadership and supervision, and Sequencing and analysis:
Dr Simon Cottrell74, Dr Justin O’Grady75,103 and Prof Dominic Kwiatkowski116,108
Leadership and supervision, Metadata curation, and Project administration:
Dr Patrick J Lillie37
Leadership and supervision, Metadata curation, and Samples and logistics:
Dr Nicholas Cortes33, Dr Nathan Moore33, Dr Claire Thomas33, Phillipa J Burns37, Dr Tabitha W Mahungu80 and Steven Liggett86
Leadership and supervision, Metadata curation, and Sequencing and analysis:
Angela H Beckett13,81 and Prof Matthew TG Holden73
Leadership and supervision, Project administration, and Samples and logistics:
Dr Lisa J Levett34, Dr Husam Osman70,35 and Dr Mohammed O Hassan-Ibrahim99
Leadership and supervision, Project administration, and Sequencing and analysis:
Dr David A Simpson77
Leadership and supervision, Samples and logistics, and Sequencing and analysis:
Dr Meera Chand72, Prof Ravi K Gupta102, Prof Alistair C Darby107 and Prof Steve Paterson107
Leadership and supervision, Sequencing and analysis, and Software and analysis tools:
Prof Oliver G Pybus23, Dr Erik M Volz39, Prof Daniela de Angelis52, Prof David L Robertson53, Dr Andrew J Page75 and Dr Inigo Martincorena116
Leadership and supervision, Sequencing and analysis, and Visualisation:
Dr Louise Aigrain116 and Dr Andrew R Bassett116
Metadata curation, Project administration, and Samples and logistics:
Dr Nick Wong50, Dr Yusri Taha89, Michelle J Erkiert99 and Dr Michael H Spencer Chapman116,102
Metadata curation, Project administration, and Sequencing and analysis:
Dr Rebecca Dewar56 and Martin P McHugh56,111
Metadata curation, Project administration, and Software and analysis tools:
Siddharth Mookerjee38,57
Metadata curation, Project administration, and Visualisation:
Stephen Aplin97, Matthew Harvey97, Thea Sass97, Dr Helen Umpleby97 and Helen Wheeler97
Metadata curation, Samples and logistics, and Sequencing and analysis:
Dr James P McKenna3, Dr Ben Warne9, Joshua F Taylor22, Yasmin Chaudhry24, Rhys Izuagbe24, Dr Aminu S Jahun24, Dr Gregory R Young 6,65, Dr Claire McMurray43, Dr Clare M McCann65,66, Dr Andrew Nelson65,66 and Scott Elliott68
Metadata curation, Samples and logistics, and Visualisation:
Hannah Lowe25
Metadata curation, Sequencing and analysis, and Software and analysis tools:
Dr Anna Price11, Matthew R Crown65, Dr Sara Rey74, Dr Sunando Roy96 and Dr Ben Temperton105
Metadata curation, Sequencing and analysis, and Visualisation:
Dr Sharif Shaaban73 and Dr Andrew R Hesketh101
Project administration, Samples and logistics, and Sequencing and analysis:
Dr Kenneth G Laing41, Dr Irene M Monahan41 and Dr Judith Heaney95,96,34
Project administration, Samples and logistics, and Visualisation:
Dr Emanuela Pelosi97, Siona Silviera97 and Dr Eleri Wilson-Davies97
Samples and logistics, Software and analysis tools, and Visualisation:
Dr Helen Fryer5
Sequencing and analysis, Software and analysis tools, and Visualization:
Dr Helen Adams4, Dr Louis du Plessis23, Dr Rob Johnson39, Dr William T Harvey53,42, Dr Joseph Hughes53, Dr Richard J Orton53, Dr Lewis G
Spurgin59, Dr Yann Bourgeois81, Dr Chris Ruis102, Áine O'Toole104, Marina Gourtovaia116 and Dr Theo Sanderson116
Funding acquisition, and Leadership and supervision:
Dr Christophe Fraser5, Dr Jonathan Edgeworth12, Prof Judith Breuer96,29, Dr Stephen L Michell105 and Prof John A Todd115
Funding acquisition, and Project administration:
Michaela John10 and Dr David Buck115
Leadership and supervision, and Metadata curation:
Dr Kavitha Gajee37 and Dr Gemma L Kay75
Leadership and supervision, and Project administration:
Prof Sharon J Peacock20,70 and David Heyburn74
Leadership and supervision, and Samples and logistics:
Katie Kitchman37, Prof Alan McNally43,93, David T Pritchard50, Dr Samir Dervisevic58, Dr Peter Muir70, Dr Esther Robinson70,35, Dr Barry B Vipond70, Newara A Ramadan78, Dr Christopher Jeanes90, Danni Weldon116, Jana Catalan118 and Neil Jones118
Leadership and supervision, and Sequencing and analysis:
Dr Ana da Silva Filipe53, Dr Chris Williams74, Marc Fuchs77, Dr Julia Miskelly77, Dr Aaron R Jeffries105, Karen Oliver116 and Dr Naomi R Park116
Metadata curation, and Samples and logistics:
Amy Ash1, Cherian Koshy1, Magdalena Barrow7, Dr Sarah L Buchan7, Dr Anna Mantzouratou7, Dr Gemma Clark15, Dr Christopher W Holmes16, Sharon Campbell17, Thomas Davis21, Ngee Keong Tan22, Dr Julianne R Brown29, Dr Kathryn A Harris29,2, Stephen P Kidd33, Dr Paul R Grant34, Dr Li Xu-McCrae35, Dr Alison Cox38,63, Pinglawathee Madona38,63, Dr Marcus Pond38,63, Dr Paul A Randell38,63, Karen T Withell48, Cheryl Williams 51, Dr Clive Graham60, Rebecca Denton-Smith62, Emma Swindells62, Robyn Turnbull62, Dr Tim J Sloan67, Dr Andrew Bosworth70,35, Stephanie Hutchings70, Hannah M Pymont70, Dr Anna Casey76, Dr Liz Ratcliffe76, Dr Christopher R Jones79,105, Dr Bridget A Knight79,105, Dr Tanzina Haque80, Dr Jennifer Hart80, Dr Dianne Irish-Tavares80, Eric Witele80, Craig Mower86, Louisa K Watson86, Jennifer Collins89, Gary Eltringham89, Dorian Crudgington98, Ben Macklin98, Prof Miren Iturriza-Gomara107, Dr Anita O Lucaci107 and Dr Patrick C McClure113
Metadata curation, and Sequencing and analysis:
Matthew Carlile18, Dr Nadine Holmes18, Dr Christopher Moore18, Dr Nathaniel Storey29, Dr Stefan Rooke73, Dr Gonzalo Yebra73, Dr Noel Craine74, Malorie Perry74, Dr Nabil-Fareed Alikhan75, Dr Stephen Bridgett77, Kate F Cook 84, Christopher Fearn84, Dr Salman Goudarzi84, Prof Ronan A Lyons88, Dr Thomas Williams104, Dr Sam T Haldenby107, Jillian Durham116 and Dr Steven Leonard116
Metadata curation, and Software and analysis tools:
Robert M Davies116
Project administration, and Samples and logistics:
Dr Rahul Batra12, Beth Blane20, Dr Moira J Spyer30,95,96, Perminder Smith32,112, Mehmet Yavus85,109, Dr Rachel J Williams96, Dr Adhyana IK Mahanama97, Dr Buddhini Samaraweera97, Sophia T Girgis102, Samantha E Hansford109, Dr Angie Green115, Dr Charlotte Beaver116, Katherine L Bellis116,102, Matthew J Dorman116, Sally Kay116, Liam Prestwood116 and Dr Shavanthi Rajatileka116
Project administration, and Sequencing and analysis:
Dr Joshua Quick43
Project administration, and Software and analysis tools:
Radoslaw Poplawski43
Samples and logistics, and Sequencing and analysis:
Dr Nicola Reynolds8, Andrew Mack11, Dr Arthur Morriss11, Thomas Whalley11, Bindi Patel12, Dr Iliana Georgana24, Dr Myra Hosmillo24, Malte L Pinckert24, Dr Joanne Stockton43, Dr John H Henderson65, Amy Hollis65, Dr William Stanley65, Dr Wen C Yew65, Dr Richard Myers72, Dr Alicia Thornton72, Alexander Adams74, Tara Annett74, Dr Hibo Asad74, Alec Birchley74, Jason Coombes74, Johnathan M Evans74, Laia Fina74, Bree Gatica-Wilcox74, Lauren Gilbert74, Lee Graham74, Jessica Hey74, Ember Hilvers74, Sophie Jones74, Hannah Jones74, Sara Kumziene-Summerhayes74, Dr Caoimhe McKerr74, Jessica Powell74, Georgia Pugh74, Sarah Taylor74, Alexander J Trotter75, Charlotte A Williams96, Leanne M Kermack102, Benjamin H Foulkes109, Marta Gallis109, Hailey R Hornsby109, Stavroula F Louka 109, Dr Manoj Pohare109, Paige Wolverson109, Peijun Zhang109, George MacIntyre-Cockett115, Amy Trebes115, Dr Robin J Moll116, Lynne Ferguson117, Dr Emily J Goldstein117, Dr Alasdair Maclean117 and Dr Rachael Tomb117
Samples and logistics, and Software and analysis tools:
Dr Igor Starinskij53
Sequencing and analysis, and Software and analysis tools:
Laura Thomson5, Joel
Southgate11,74, Dr Moritz UG Kraemer23, Dr Jayna Raghwani23, Dr Alex E Zarebski23, Olivia Boyd39, Lily Geidelberg39, Dr Chris J Illingworth52, Dr Chris Jackson52, Dr David Pascall52, Dr Sreenu Vattipally53, Timothy M Freeman109, Dr Sharon N Hsu109, Dr Benjamin B Lindsey109, Dr Keith James116, Kevin Lewis116, Gerry Tonkin-Hill116 and Dr Jaime M Tovar-Corona116
Sequencing and analysis, and Visualisation:
MacGregor Cox20
Software and analysis tools, and Visualisation:
Dr Khalil Abudahab14,116, Mirko Menegazzo14, Ben EW Taylor MEng14,116, Dr Corin A Yeats14, Afrida Mukaddas53, Derek W Wright53, Dr Leonardo de Oliveira Martins75, Dr Rachel Colquhoun104, Verity Hill104, Dr Ben Jackson104, Dr JT McCrone104, Dr Nathan Medd104, Dr Emily Scher104 and Jon-Paul Keatley116
Leadership and supervision:
Dr Tanya Curran3, Dr Sian Morgan10, Prof Patrick Maxwell20, Prof Ken Smith20, Dr Sahar Eldirdiri21, Anita Kenyon21, Prof Alison H Holmes38,57, Dr James R Price38,57, Dr Tim Wyatt69, Dr Alison E Mather75, Dr Timofey Skvortsov77 and Prof John A Hartley96
Metadata curation:
Prof Martyn Guest11, Dr Christine Kitchen11, Dr Ian Merrick11, Robert Munn11, Dr Beatrice Bertolusso33, Dr Jessica Lynch33, Dr Gabrielle Vernet33, Stuart Kirk34, Dr Elizabeth Wastnedge56, Dr Rachael Stanley58, Giles Idle64, Dr Declan T Bradley69,77, Dr Jennifer Poyner79 and Matilde Mori110
Project administration:
Owen Jones11, Victoria Wright18, Ellena Brooks20, Carol M Churcher20, Mireille Fragakis20, Dr Katerina Galai20,70, Dr Andrew Jermy20, Sarah Judges20, Georgina M McManus20, Kim S Smith20, Dr Elaine Westwick20, Dr Stephen W Attwood23, Dr Frances Bolt38,57, Dr Alisha Davies74, Elen De Lacy74, Fatima Downing74, Sue Edwards74, Lizzie Meadows75, Sarah Jeremiah97, Dr Nikki Smith109 and Luke Foulser116
Samples and logistics:
Dr Themoula Charalampous12,46, Amita Patel12, Dr Louise Berry15, Dr Tim Boswell15, Dr Vicki M Fleming15, Dr Hannah C Howson-Wells15, Dr Amelia Joseph15, Manjinder Khakh15, Dr Michelle M Lister15, Paul W Bird16, Karlie Fallon16, Thomas Helmer16, Dr Claire L McMurray16, Mina Odedra16, Jessica Shaw16, Dr Julian W Tang16, Nicholas J Willford16, Victoria Blakey17, Dr Veena Raviprakash17, Nicola Sheriff17, Lesley-Anne Williams17, Theresa Feltwell20, Dr Luke Bedford26, Dr James S Cargill27, Warwick Hughes27, Dr Jonathan Moore28, Susanne Stonehouse28, Laura Atkinson29, Jack CD Lee29, Dr Divya Shah29, Adela Alcolea-Medina32,112, Natasha Ohemeng-Kumi32,112, John Ramble32,112, Jasveen Sehmi32,112, Dr Rebecca Williams33, Wendy Chatterton34, Monika Pusok34, William Everson37, Anibolina Castigador44, Emily Macnaughton44, Dr Kate El Bouzidi45, Dr Temi Lampejo45, Dr Malur Sudhanva45, Cassie Breen47, Dr Graciela Sluga48, Dr Shazaad SY Ahmad49,70, Dr Ryan P George49, Dr Nicholas W Machin49,70, Debbie Binns50, Victoria James50, Dr Rachel Blacow55, Dr Lindsay Coupland58, Dr Louise Smith59, Dr Edward Barton60, Debra Padgett60, Garren Scott60, Dr Aidan Cross61, Dr Mariyam Mirfenderesky61, Jane Greenaway62, Kevin Cole64, Phillip Clarke67, Nichola Duckworth67, Sarah Walsh67, Kelly Bicknell68, Robert Impey68, Dr Sarah Wyllie68, Richard Hopes70, Dr Chloe Bishop72, Dr Vicki Chalker72, Dr Ian Harrison72, Laura Gifford74, Dr Zoltan Molnar77, Dr Cressida Auckland79, Dr Cariad Evans85,109, Dr Kate Johnson85,109, Dr David G Partridge85,109, Dr Mohammad Raza85,109, Paul Baker86, Prof Stephen Bonner86, Sarah Essex86, Leanne J Murray86, Andrew I Lawton87, Dr Shirelle Burton-Fanning89, Dr Brendan AI Payne89, Dr Sheila Waugh89, Andrea N Gomes91, Maimuna Kimuli91, Darren R Murray91, Paula Ashfield92, Dr Donald Dobie92, Dr Fiona Ashford93, Dr Angus Best93, Dr Liam Crawford93, Dr Nicola Cumley93, Dr Megan Mayhew93, Dr Oliver Megram93, Dr Jeremy Mirza93, Dr Emma Moles-Garcia93, Dr Benita Percival93, Megan Driscoll96, Leah Ensell96, Dr Helen L Lowe96, Laurentiu Maftei96, Matteo Mondani96, Nicola J Chaloner99, Benjamin J Cogger99, Lisa J Easton99, Hannah Huckson99, Jonathan Lewis99, Sarah Lowdon99, Cassandra S Malone99, Florence Munemo99, Manasa Mutingwende99, Roberto Nicodemi99, Olga Podplomyk99, Thomas Somassa99, Dr Andrew Beggs100, Dr Alex Richter100, Claire Cormie102, Joana Dias102, Sally Forrest102, Dr Ellen E Higginson102, Mailis Maes102, Jamie Young102,
Dr Rose K Davidson103, Kathryn A Jackson107, Dr Lance Turtle107, Dr Alexander J Keeley109, Prof Jonathan Ball113, Timothy Byaruhanga113, Dr Joseph G Chappell113, Jayasree Dey113, Jack D Hill113, Emily J Park113, Arezou Fanaie114, Rachel A Hilson114, Geraldine Yaze114 and Stephanie Lo116
Sequencing and analysis:
Safiah Afifi10, Robert Beer10, Joshua Maksimovic10, Kathryn McCluggage10, Karla Spellman10, Catherine Bresner11, William Fuller11, Dr Angela Marchbank11, Trudy Workman11, Dr Ekaterina Shelest13,81, Dr Johnny Debebe18, Dr Fei Sang18, Dr Marina Escalera Zamudio23, Dr Sarah Francois23, Bernardo Gutierrez23, Dr Tetyana I Vasylyeva23, Dr Flavia Flaviani31, Dr Manon Ragonnet-Cronin39, Dr Katherine L Smollett42, Alice Broos53, Daniel Mair53, Jenna Nichols53, Dr Kyriaki Nomikou53, Dr Lily Tong53, Ioulia Tsatsani53, Prof Sarah O'Brien54, Prof Steven Rushton54, Dr Roy Sanderson54, Dr Jon Perkins55, Seb Cotton56, Abbie Gallagher56, Dr Elias Allara70,102, Clare Pearson70,102, Dr David Bibby72, Dr Gavin Dabrera72, Dr Nicholas Ellaby72, Dr Eileen Gallagher72, Dr Jonathan Hubb72, Dr Angie Lackenby72, Dr David Lee72, Nikos Manesis72, Dr Tamyo Mbisa72, Dr Steven Platt72, Katherine A Twohig72, Dr Mari Morgan74, Alp Aydin75, David J Baker75, Dr Ebenezer Foster-Nyarko75, Dr Sophie J Prosolek75, Steven Rudder75, Chris Baxter77, Sílvia F Carvalho77, Dr Deborah Lavin77, Dr Arun Mariappan77, Dr Clara Radulescu77, Dr Aditi Singh77, Miao Tang77, Helen Morcrette79, Nadua Bayzid96, Marius Cotic96, Dr Carlos E Balcazar104, Dr Michael D Gallagher104, Dr Daniel Maloney104, Thomas D Stanton104, Dr Kathleen A Williamson104, Dr Robin Manley105, Michelle L Michelsen105, Dr Christine M Sambles105, Dr David J Studholme105, Joanna Warwick-Dugdale105, Richard Eccles107, Matthew Gemmell107, Dr Richard Gregory107, Dr Margaret Hughes107, Charlotte Nelson107, Dr Lucille Rainbow107, Dr Edith E Vamos107, Hermione J Webster107, Dr Mark Whitehead107, Claudia Wierzbicki107, Dr Adrienn Angyal109, Dr Luke R Green109, Dr Max Whiteley109, Emma Betteridge116, Dr Iraad F Bronner116, Ben W Farr116, Scott Goodwin116, Dr Stefanie V Lensing116, Shane A McCarthy116,102, Dr Michael A Quail116, Diana Rajan116, Dr Nicholas M Redshaw116, Carol Scott116, Lesley Shirley116 and Scott AJ Thurston116
Software and analysis tools:
Dr Will Rowe43, Amy Gaskin74, Dr Thanh Le-Viet75, James Bonfield116, Jennifier Liddle116 and Andrew Whitwham116
1Barking, Havering and Redbridge University Hospitals NHS Trust, 2Barts Health NHS Trust, 3Belfast Health & Social Care Trust, 4Betsi Cadwaladr University Health Board, 5Big Data Institute, Nuffield Department of Medicine, University of Oxford, 6Blackpool Teaching Hospitals NHS Foundation Trust, 7Bournemouth University, 8Cambridge Stem Cell Institute, University of Cambridge, 9Cambridge University Hospitals NHS Foundation Trust, 10Cardiff and Vale University Health Board, 11Cardiff University, 12Centre for Clinical Infection and Diagnostics Research, Department of Infectious Diseases, Guy's and St Thomas' NHS Foundation Trust, 13Centre for Enzyme Innovation, University of Portsmouth, 14Centre for Genomic Pathogen Surveillance, University of Oxford, 15Clinical Microbiology Department, Queens Medical Centre, Nottingham University Hospitals NHS Trust, 16Clinical Microbiology, University Hospitals of Leicester NHS Trust, 17County Durham and Darlington NHS Foundation Trust, 18Deep Seq, School of Life Sciences, Queens Medical Centre, University of Nottingham, 19Department of Infectious Diseases and Microbiology, Cambridge University Hospitals NHS Foundation Trust, 20Department of Medicine, University of Cambridge, 21Department of Microbiology, Kettering General Hospital, 22Department of Microbiology, South West London Pathology, 23Department of Zoology, University of Oxford, 24Division of Virology, Department of Pathology, University of Cambridge, 25East Kent Hospitals University NHS Foundation Trust, 26East Suffolk and North Essex NHS Foundation Trust, 27East Sussex Healthcare NHS Trust, 28Gateshead Health NHS Foundation Trust, 29Great Ormond Street Hospital for Children NHS Foundation Trust, 30Great Ormond Street Institute of Child Health (GOS ICH), University College London (UCL), 31Guy's and St. Thomas’ Biomedical Research Centre, 32Guy's and St. Thomas’ NHS Foundation Trust, 33Hampshire Hospitals NHS Foundation Trust, 34Health Services Laboratories, 35Heartlands Hospital, Birmingham, 36Hub for Biotechnology in the Built Environment, Northumbria University, 37Hull University Teaching Hospitals NHS Trust, 38Imperial College Healthcare NHS Trust, 39Imperial College London, 40Infection Care Group, St George’s University Hospitals NHS Foundation Trust, 41Institute for Infection and Immunity, St George’s University of London, 42Institute of Biodiversity, Animal Health & Comparative Medicine, 43Institute of Microbiology and Infection, University of Birmingham, 44Isle of Wight NHS Trust, 45King's College Hospital NHS Foundation Trust, 46King's College London, 47Liverpool Clinical Laboratories, 48Maidstone and Tunbridge Wells NHS Trust, 49Manchester University NHS Foundation Trust, 50Microbiology Department, Buckinghamshire Healthcare NHS Trust, 51Microbiology, Royal Oldham Hospital, 52MRC Biostatistics Unit, University of Cambridge, 53MRC-University of Glasgow Centre for Virus Research, 54Newcastle University, 55NHS Greater Glasgow and Clyde, 56NHS Lothian,
57NIHR Health Protection Research Unit in HCAI and AMR, Imperial College London, 58Norfolk and Norwich University Hospitals NHS Foundation Trust, 59Norfolk County Council, 60North Cumbria Integrated Care NHS Foundation Trust, 61North Middlesex University Hospital NHS Trust, 62North Tees and Hartlepool NHS Foundation Trust, 63North West London Pathology, 64Northumbria Healthcare NHS Foundation Trust, 65Northumbria University, 66NU-OMICS, Northumbria University, 67Path Links, Northern Lincolnshire and Goole NHS Foundation Trust, 68Portsmouth Hospitals University NHS Trust, 69Public Health Agency, Northern Ireland, 70Public Health England, 71Public Health England, Cambridge, 72Public Health England, Colindale, 73Public Health Scotland, 74Public Health Wales, 75Quadram Institute Bioscience, 76Queen Elizabeth Hospital, Birmingham, 77Queen's University Belfast, 78Royal Brompton and Harefield Hospitals, 79Royal Devon and Exeter NHS Foundation Trust, 80Royal Free London NHS Foundation Trust, 81School of Biological Sciences, University of Portsmouth, 82School of Health Sciences, University of Southampton, 83School of Medicine, University of Southampton, 84School of Pharmacy & Biomedical Sciences, University of Portsmouth, 85Sheffield Teaching Hospitals NHS Foundation Trust, 86South Tees Hospitals NHS Foundation Trust, 87Southwest Pathology Services, 88Swansea University, 89The Newcastle upon Tyne Hospitals NHS Foundation Trust, 90The Queen Elizabeth Hospital King's Lynn NHS Foundation Trust, 91The Royal Marsden NHS Foundation Trust, 92The Royal Wolverhampton NHS Trust, 93Turnkey Laboratory, University of Birmingham, 94 University College London Division of Infection and Immunity, 95University College London Hospital Advanced Pathogen Diagnostics Unit, 96University College London Hospitals NHS Foundation Trust, 97University Hospital Southampton NHS Foundation Trust, 98University Hospitals Dorset NHS Foundation Trust, 99University Hospitals Sussex NHS Foundation Trust, 100University of Birmingham, 101University of Brighton, 102University of Cambridge, 103University of East Anglia, 104University of Edinburgh, 105University of Exeter, 106University of Kent, 107University of Liverpool, 108University of Oxford, 109University of Sheffield, 110University of Southampton, 111University of St Andrews, 112Viapath, Guy's and St Thomas' NHS Foundation Trust, and King's College Hospital NHS Foundation Trust, 113Virology, School of Life Sciences, Queens Medical Centre, University of Nottingham, 114Watford General Hospital, 115Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, 116Wellcome Sanger Institute, 117West of Scotland Specialist Virology Centre, NHS Greater Glasgow and Clyde, 118Whittington Health NHS Trust.