WHO. Global Tuberculosis report 2015; 2015.
Google Scholar
WHO. WHO Report 2014. Global tuberculosis control 2014; 2014.
Google Scholar
Kamerbeek J, Schouls L, Kolk A, van Agterveld M, van Soolingen D, Kuijper S, et al. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol. 1997;35(4):907–14.
CAS
PubMed
PubMed Central
Google Scholar
Demay C, Liens B, Burguiere T, Hill V, Couvin D, Millet J, et al. SITVITWEB--a publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology. Infect Genet Evol. 2012;12(4):755–66.
Article
CAS
PubMed
Google Scholar
Brudey K, Driscoll JR, Rigouts L, Prodinger WM, Gori A, Al-Hajoj SA, et al. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiol. 2006;6:23.
Article
PubMed
PubMed Central
Google Scholar
Comas I, Homolka S, Niemann S, Gagneux S. Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies. PLoS One. 2009;4(11):e7815.
Stucki D, Ballif M, Egger M, Furrer H, Altpeter E, Battegay M, et al. Standard genotyping overestimates transmission of Mycobacterium tuberculosis among immigrants in a low incidence country. J Clin Microbiol. 2016;54(7):1862-70.
Supply P, Allix C, Lesjean S, Cardoso-Oelemann M, Rusch-Gerdes S, Willery E, et al. Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis. J Clin Microbiol. 2006;44(12):4498–510.
Article
CAS
PubMed
PubMed Central
Google Scholar
Small PM, Hopewell PC, Singh SP, Paz A, Parsonnet J, Ruston DC, et al. The epidemiology of tuberculosis in San Francisco-a population-based study using conventional and molecular methods. N Engl J Med. 1994;330(24):1703–9.
Article
CAS
PubMed
Google Scholar
Moonan PK, Ghosh S, Oeltmann JE, Kammerer JS, Cowan LS, Navin TR. Using genotyping and geospatial scanning to estimate recent Mycobacterium tuberculosis transmission, United States. Emerg Infect Dis. 2012;18(3):458–65.
Article
PubMed
PubMed Central
Google Scholar
Izumi K, Ohkado A, Uchimura K, Murase Y, Tatsumi Y, Kayebeta A, et al. Detection of tuberculosis infection hotspots using activity spaces based spatial approach in an Urban Tokyo, from 2003 to 2011. PLoS One. 2015;10(9):e0138831.
Article
PubMed
PubMed Central
Google Scholar
Ribeiro FK, Pan W, Bertolde A, Vinhas SA, Peres RL, Riley L, et al. Genotypic and spatial analysis of Mycobacterium tuberculosis transmission in a high-incidence urban setting. Clin Infect Dis. 2015;61(5):758-66.
Gurjav U, Burneebaatar B, Narmandakh E, Tumenbayar O, Ochirbat B, Hill-Cawthorne GA, et al. Spatiotemporal evidence for cross-border spread of MDR-TB along the Trans-Siberian Railway line. Int J Tuberc Lung Dis. 2015;19(11):1376–82.
Article
CAS
PubMed
Google Scholar
Kulldorff M, Nagarwalla N. Spatial disease clusters: detection and inference. Stat Med. 1995;14(8):799–810.
Article
CAS
PubMed
Google Scholar
Randremanana RV, Sabatier P, Rakotomanana F, Randriamanantena A, Richard V. Spatial clustering of pulmonary tuberculosis and impact of the care factors in Antananarivo City. Tropical Med Int Health. 2009;14(4):429–37.
Article
Google Scholar
WHO. Tuberculose: profil de pays/Madagascar. 2014.
Google Scholar
Rakotosamimanana S, Mandrosovololona V, Rakotonirina J, Ramamonjisoa J, Ranjalahy JR, Randremanana RV, et al. Spatial analysis of pulmonary tuberculosis in Antananarivo Madagascar: tuberculosis-related knowledge, attitude and practice. PLoS ONE. 2014;9(11):e110471.
Article
PubMed
PubMed Central
Google Scholar
Randremanana RV, Richard V, Rakotomanana F, Sabatier P, Bicout DJ. Bayesian mapping of pulmonary tuberculosis in Antananarivo, Madagascar. BMC Infect Dis. 2010;10(1):21.
Article
PubMed
PubMed Central
Google Scholar
Ferdinand S, Sola C, Chanteau S, Ramarokoto H, Rasolonavalona T, Rasolofo-Razanamparany V, et al. A study of spoligotyping-defined Mycobacterium tuberculosis clades in relation to the origin of peopling and the demographic history in Madagascar. Infect Genet Evol. 2005;5(4):340–8.
Article
PubMed
Google Scholar
Razanamparany VR, Ménard D, Aurégan G, Gicquel B, Chanteau S. Extrapulmonary and pulmonary tuberculosis in Antananarivo (Madagascar): high clustering rate in female patients. J Clin Microbiol. 2002;40(11):3964–9.
Article
Google Scholar
Rasolofo-Razanamparany V, Auregan G, Ratsirahonana O, Raharimanana R, Ramarokoto H, Gicquel B, et al. Genetic polymorphism of M. tuberculosis strains in Antananaviro. Arch Inst Pasteur Madagascar. 1994;62(1):59–64.
Google Scholar
Wachsberger J-M. Les quartiers pauvres à Antananarivo. Autrepart. 2009(3):117–37. http://www.cairn.info/revue-autrepart-2009-3-page-117.htm. Accessed 3 June.
Zhang J, Abadia E, Refregier G, Tafaj S, Boschiroli ML, Guillard B, et al. Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of ‘spoligotyping’ with new spacers and a microbead-based hybridization assay. J Med Microbiol. 2010;59(Pt 3):285–94.
Article
PubMed
Google Scholar
Coll F, McNerney R, Guerra-Assunçào JA, Glynn JR, Perdigào J, Viveiros M, et al. A robust SNP barcode for typing Mycobacterium tuberculosis complex strains. Nat Commun. 2014;5:4812.
Article
CAS
PubMed
PubMed Central
Google Scholar
Coll F, Preston M, Guerra-Assunçào JA, Hill-Cawthorn G, Harris D, Perdigào J, et al. PolyTB: a genomic variation map for Mycobacterium tuberculosis. Tuberculosis. 2014;94(3):346–54.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kulldorff M. A spatial scan statistic. Communications in statistics. 1997;26:1481–96.
Article
Google Scholar
Rakotosamimanana N, Raharimanga V, Andriamandimby SF, Soares JL, Doherty TM, Ratsitorahina M, et al. Variation in gamma interferon responses to different infecting strains of Mycobacterium tuberculosis in acid-fast bacillus smear-positive patients and household contacts in Antananarivo, Madagascar. Clin Vaccine Immunol. 2010;17(7):1094–103.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gomgnimbou MK, Hernandez-Neuta I, Panaiotov S, Bachiyska E, Palomino JC, Martin A, et al. Tuberculosis-spoligo-rifampin-isoniazid typing: an all-in-one assay technique for surveillance and control of multidrug-resistant tuberculosis on Luminex devices. J Clin Microbiol. 2013;51(11):3527–34.
Article
CAS
PubMed
PubMed Central
Google Scholar