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Low prevalence of hepatitis C co-infection in recently HIV-infected minority men who have sex with men in Los Angeles: a cross-sectional study
© Chew et al. 2015
Received: 20 July 2015
Accepted: 12 November 2015
Published: 20 November 2015
Geographic and sociodemographic characterization of hepatitis C virus (HCV) transmission amongst men who have sex with men (MSM) has been limited. Our aim was to characterize HCV prevalence, risk factors for HCV co-infection, and patterns of HIV and HCV co-transmission and transmitted drug resistance mutations (DRMs) in newly HIV-diagnosed Los Angeles MSM.
Viral RNA was extracted from stored plasma samples from a Los Angeles cohort of newly diagnosed HIV-infected MSM with well-characterized substance use and sexual behavioral characteristics via computer-assisted self-interviewing surveys. Samples were screened for HCV by qPCR. HCV E1, E2, core, NS3 protease and NS5B polymerase and HIV-1 protease and reverse transcriptase regions were amplified and sequenced. Phylogenetic analysis was used to determine relatedness of HCV and HIV-1 isolates within the cohort and viral sequences were examined for DRMs.
Of 185 newly HIV-diagnosed MSM, the majority (65 %) were of minority race/ethnicity and recently infected (57.8 %), with median age of 28.3 years. A minority (6.6 %) reported injection drug use (IDU), whereas 96 (52.8 %) reported recent substance use, primarily cannabis or stimulant use. High risk sexual behaviors included 132 (74.6 %) with unprotected receptive anal intercourse, 60 (33.3 %) with group sex, and 10 (5.7 %) with fisting. Forty-five (24.3 %) had acute gonorrhea or chlamydia infection. Only 3 (1.6 %) subjects had detectable HCV RNA. Amongst these subjects, HIV and HCV isolates were unrelated by phylogenetic analysis and none possessed clinically relevant NS3 or NS5B HCV DRMs.
Prevalence of HCV co-infection was low and there was no evidence of HIV-HCV co-transmission in this cohort of relatively young, predominantly minority, newly HIV-diagnosed MSM, most with early HIV infection, with high rates of high risk sexual behaviors, STI, and non-IDU. The low HCV prevalence in a group with high-risk behaviors for non-IDU HCV acquisition suggests an opportune time for targeted HCV prevention measures.
Hepatitis C virus (HCV) co-infection is common amongst HIV-infected persons, affecting an estimated 4 to 5 million persons worldwide, and is associated with increased morbidity and mortality [1, 2]. Whereas the primary route of HCV transmission remains injection drug use (IDU), over recent years there has been increasing evidence of sexual transmission among HIV-infected men who have sex with men (MSM), likely driven by mucosal risk factors, including unprotected and traumatic sexual practices in the context of multiple partners, non-injection drug use, and sexually transmitted infections [3–7]. Prevalence estimates for HCV co-infection in HIV-infected MSM have ranged from 6 to 15.7 %, with limited geographic characterization [8–12]. The prevalence of HCV co-infection in HIV-infected MSM in Los Angeles County (LAC) in the U.S. has not been defined, despite LAC being the second largest epicenter for AIDS cases nationally, with high rates of non-injection drug use and high-risk sexual practices. Our aims were to characterize the prevalence of and risk factors for HCV co-infection and patterns of HIV and HCV co-transmission and drug resistance mutations (DRMs) in a cohort of newly HIV-infected or HIV-diagnosed Los Angeles MSM.
Between February 2009 and May 2012 we enrolled participants from a community-based organization providing sexual health services to the gay community in LAC: The Los Angeles LGBT Center. Clients were eligible if they were recently HIV-infected (<1 year of infection) or newly HIV-diagnosed, at least 18 years of age, male, and reported sex with a male partner in the past year. Recent infection was determined by one of four ways: nucleic acid amplification test with negative serology, detuned assay (Low Sensitivity Vitros ECi, Ortho Clinical Diagnostics, Rochester, NY), provider verification, or negative HIV testing within the past year. Plasma was collected and syphilis, chlamydia, and gonorrhea testing performed for all participants. Behavioral and sociodemographic data were collected via computer-assisted self-interview. Minority race/ethnicity was defined as self-identified African-American race or Hispanic ethnicity.
Viral RNA was extracted from stored plasma using the UltrasSens Viral Isolation kit (Qiagen), converted to cDNA using Superscript III Reverse Transcriptase (Invitrogen), and screened for HCV by quantitative polymerase chain reaction (PCR) designed to detect the HCV 5′UTR. The HCV E1/E2/core, NS3 and NS5B regions from HCV positive samples and HIV-1 protease and RT regions from all samples were amplified using either Phusion High-Fidelity DNA Polymerase (New England BioLabs) or KOD High-Fidelity Polymerase (Novagen). PCR products were directly sequenced using the BigDye v3.1 Kit (Applied Biosystems).
Sequences were checked for quality, edited, and alignments performed using Chromas Lite (Technelysium Pty Ltd, South Brisbane, Australia) and BioEdit (Ibis Biosciences, Carlsbad, CA). Consensus sequences of an 857 nucleotide (nt) fragment of the HCV NS3 protease gene spanning amino acids 13–297 were aligned with genotype consensus sequences obtained from the Los Alamos National Laboratory (LANL) HCV database (http://www.hiv.lanl.gov), JFH-1, and additional HCV sequences collected from the Los Angeles area. A 1302 nt fragment of the pol gene (HXB2 reference location nt 2254–3555) was aligned with the Clade B consensus sequences obtained from the LANL HIV database. Neighbor-joining phylogenetic trees were generated using the DNAdist and Neighbor programs of PHYLIP. Sequences were examined for the following HCV DRMs: V36M/A, T54A/S, V55A, Q80K, R155K, A156S/T, D168T/V, I/V170A and S282T. HIV-1 DRMs were determined using the Stanford University HIV Drug Resistance Database (http://hivdb.stanford.edu/).
The study was reviewed and approved by the University of California, Los Angeles Institutional Review Board (IRB# 10–000806) and the Los Angeles LGBT Center Review Committee. Written informed consent was obtained from each study participant, including permission to use stored plasma samples for research testing.
Baseline characteristics of the cohort, overall and by hepatitis C virus (HCV) status
Total (N = 185) na (%) or median (IQR)
HCV negative (N = 182) na (%) or median (IQR)
HCV positive (N = 3) na (%) or median (IQR)
Incarcerated, past 12 months
Substance Use, past 3 months
Any drugs (including cannabis)
Injection drug use, past 12 months
Partner injection drug use, past 12 months
Alcohol use, past 3 months
Sexual partners, past 12 months
Unprotected insertive AI, last 6 partners
Unprotected receptive AI, last 6 partners
Fisted by partner, last 6 partners
Sexually Transmitted Infections
Chlamydia, baseline testing
Gonorrhea, baseline testing
Syphilis, TPPA positive, baseline testing
Chlamydia, self-reported, past 12 months
Gonorrhea, self-reported, past 12 months
Syphilis, self-reported, past 12 months
HSV, self-reported, past 12 months
HIV viral load, copies/mLb
CD4 cell count (cells/mm3)c
Only 3 (1.6 %) subjects had detectable HCV RNA. HCV viral load ranged from 67,000 to 2.2 million copies/ml. There were too few HCV infections to identify significant risk factors for HCV co-infection. Of the 3 HCV-positive subjects, all were of minority race or ethnicity; one subject was classified as newly HIV infected by detuned assay and two were newly diagnosed with HIV infection of unknown duration. Only 1 reported a history of IDU. All 3 subjects reported non-injection drug use, including methamphetamines, within the past 3 months. All 3 subjects also reported high-risk sexual behavior, including UIAI, URAI, and group sex.
Prevalence of HCV co-infection was low and there was no evidence of HIV-HCV co-transmission in this cohort of young, predominantly minority, newly HIV-diagnosed MSM. The majority of subjects had recent HIV infection and notable behavioral and clinical risk factors for sexual HCV transmission, including high-risk sexual practices, sexually transmitted infections, and non-injection (primarily stimulant) substance use, with low rates of injection drug use. The lower prevalence of HCV compared with other HIV-infected MSM cohorts (1.6 vs 6–15.7 %) [8–12] may reflect the younger age of the cohort with fewer cumulative exposures to HCV, lower rates of IDU, relatively greater immune preservation with earlier HIV infection, and identification of HCV by HCV RNA instead of by serology. In our study, by measuring HCV RNA, we measured prevalence of active HCV replication and not exposure or infection with possible clearance, as would be measured by serology. Assessment by both serology and HCV RNA would provide broader characterization of HCV exposure in the cohort, but due to limited sample volume, we could not perform testing for both and elected for HCV RNA testing alone as a measure of active HCV infection and risk for HCV transmission. Demographically, our cohort differed from others in its geographic and racial/ethnic composition, wherein our cohort was predominantly of minority race and half was Hispanic, as compared to most other reported cohorts that were predominantly White. The epidemiology of HCV co-infection in HIV-infected Hispanic MSM has not been well described. As described by Kunikholm et al., utilizing National Health and Nutrition Examination Survey (NHANES) and Hispanic Community Health Study/Study of Latinos (HCHS/SOL) data, HCV prevalence appears to differ by Hispanic/Latino background and the prevalence of HCV in the West Coast Hispanic population may be lower than in others .
While there were too few subjects with HCV infection in the cohort to explore associations between potential behavioral risk factors and HCV infection, the subjects that did have HCV co-infection all reported methamphetamine and other non-injection drug use, as well as high-risk sexual practices, consistent with risk factors identified in larger cohorts. The lack of HCV clustering or transmission pairs is likely due to the smaller sample size than in other studies [6, 7], as well as may relate uniquely to the geographically wide sexual networks in LAC compared to other urban areas. The lack of evidence of HIV-HCV co-transmission may reflect the low prevalence of HCV infection in the cohort, but may also suggest that co-transmission occurs infrequently, and that HCV infection is more often acquired following HIV infection, instead of simultaneously or preceding HIV infection, particularly in non-IDU settings. The lack of HCV DRMs is likely due to the few observed HCV infections.
We found a lower than expected prevalence of HCV infection in our LAC HIV-infected cohort of MSM. By behavioral risk factors, the population studied is at high risk for incident HCV infection. This presents an opportunity, namely at the time of a new HIV diagnosis and during early HIV infection, for targeted HCV prevention strategies to reduce non-IDU HCV transmission among HIV-infected MSM.
Availability of data and materials
We are complying with the NIH policy on shared data. HIV and HCV sequences are available in the NIH genetic sequence database GenBank, accession numbers KJ680920 - KJ680970 and KM874782 - KM874789.
This work was supported by the National Institute of Allergy and Infectious Diseases at the National Institutes of Health (P30 AI028697, Center for AIDS Research supplement to KWC) and the National Institute on Drug Abuse at the National Institutes of Health (R01 DA022116 to PMG).
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