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Table 1 Primers used and strains detected by conventional PCR.

From: Usefulness of real time PCR for the differentiation and quantification of 652 and JP2 Actinobacillus actinomycetemcomitans genotypes in dental plaque and saliva

Name

Target

Strain

Sequence 5'--------------3'

GenBank Accession No

PCR product (bp)

OG 43

16S rRNA

Actinobacillus actimycetemcomitans

CCAAGTGTGATTAGGTAGTT

M75036

226

OG 44

16S rRNA

Actinobacillus actimycetemcomitans

ACCAACCTTCCTCAATAC

M75036

 

OG53

16S rRNA

Prevotella intermedia

CGTATCCAACCTTCCCTCC

X73965

389

OG54

16S rRNA

Prevotella intermedia

ATTAGCCGGTCCTTATTCGAAG

X73965

 

OG94

prtC

Porphyromonas gingivalis

GAATCAAATACTTCAGCCGTCT

AB006973

143

OG95

prtC

Porpyromonas gingivalis

TTGCAGTTCGTATCGGATCT

AB006973

 

OG45

16S rRNA

Tannerella forsythensis

GTCGGACTAATACCTCATAAAACA

L16495

222

OG46

16S rRNA

Tannerella forsythensis

TCGCCCATTGACCAATATT

L16495

 

OG348

16S rRNA

Treponema denticola

AGAGAAAGGGTAATTTGAAG

AF179264

399

OG349

16S rRNA

Treponema denticola

TATTATTGTCCCTTCTTTCTT

AF179264

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