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Use of a nested PCR-enzyme immunoassay with an internal control to detect Chlamydophila psittaciin turkeys
- Marnix Van Loock†1,
- Kristel Verminnen†2,
- Trudy O Messmer3,
- Guido Volckaert1,
- Bruno M Goddeeris1, 4Email author and
- Daisy Vanrompay2
© Van Loock et al; licensee BioMed Central Ltd. 2005
Received: 03 June 2005
Accepted: 26 September 2005
Published: 26 September 2005
Laboratory diagnosis of Chlamydophila psittaci, an important turkey respiratory pathogen, is difficult. To facilitate the diagnosis, a nested PCR-enzyme immunoassay (PCR-EIA) was developed to detect the Cp. psittaci outer membrane protein A (ompA) gene in pharyngeal swabs.
The fluorescein-biotin labelled PCR products were immobilized on streptavidin-coated microtiter plates and detected with anti-fluorescein peroxidase conjugate and a colorimetric substrate. An internal inhibition control was included to rule out the presence of inhibitors of DNA amplification. The diagnostic value of the ompA nested PCR-EIA in comparison to cell culture and a 16S-rRNA based nested PCR was assessed in pharyngeal turkey swabs from 10 different farms experiencing respiratory disease.
The sensitivity of the nested PCR-EIA was established at 0.1 infection forming units (IFU). Specificity was 100%. The ompA nested PCR-EIA was more sensitive than the 16S-rRNA based nested PCR and isolation, revealing 105 out of 200 (52.5%) positives against 13 and 74 for the latter two tests, respectively. Twenty-nine (23.8%) out of 122 ompA PCR-EIA negatives showed the presence of inhibitors of DNA amplification, although 27 of them became positive after diluting (1/10) the specimens in PCR buffer or after phenol-chloroform extraction and subsequent ethanol precipitation.
The present study stresses the need for an internal control to confirm PCR true-negatives and demonstrates the high prevalence of chlamydiosis in Belgian turkeys and its potential zoonotic risk. The ompA nested PCR-EIA described here is a rapid, highly sensitive and specific diagnostic assay and will help to facilitate the diagnosis of Cp. psittaci infections in both poultry and man.
Avian chlamydiosis is caused by the obligate intracellular Gram-negative bacterium Chlamydophila psittaci (formerly Chlamydia psittaci). Currently, seven genotypes of Cp. psittaci are known to infect birds [1–3]. Avian chlamydiosis in birds is usually systemic and occasionally fatal. The clinical signs vary greatly in severity and depend on the species, age of the bird and the strain of Cp. psittaci. Avian chlamydiosis can produce lethargy, hyperthermia, abnormal excretions, nasal and eye discharges, and reduced egg production. Mortality rates range up to 30% . Avian chlamydiosis occurs worldwide, with the incidence and distribution varying greatly with the species of bird and the serotype of the chlamydial organism. In the past, chlamydiosis in turkeys was thought to be limited to the United States and to free-ranging flocks. Most outbreaks in US turkeys were explosive, involving one or more flocks [5–10]. Nowadays, the increase in confinement-rearing of turkeys and the prevention of wild birds flying in and out the turkey houses seems to contribute to a decrease of severe outbreaks. Probably, the situation is comparable to the one in Europe where, at present, Cp. psittaci is nearly endemic in Belgian, German and probably French turkeys [11–13]. However, devastating, explosive outbreaks with high mortality rates occur occasionally, whereas present outbreaks are mostly characterized by respiratory signs without mortality . Nevertheless, Cp. psittaci causes important economical losses as a primary pathogen and trough it's pathogenic interaction with other respiratory pathogens like the avian pneumovirus (APV) and Ornithobacterium rhinotracheale (ORT) . Cp. psittaci is also a threat to public health as this zoonotic agent can infect humans and precautions should be taken when handling infected birds or contaminated materials [14–17]. Human infections are common following handling or processing of infected turkeys or ducks [2, 7, 8, 18]. Most infections are through inhalation of infectious aerosols and subsequently processing plant employees, farm workers, veterinarians and poultry inspectors are at risk. However, personnel who were employed to further process turkey meat could also become infected .
Thus, diagnosis is essential. In contrast to cell culture and serology, antigen detection methods like micro-immunofluorescence and PCR provide a more rapid, specific and sensitive alternative for identification of Cp. psittaci infection. However, currently described PCR assays for birds use either labour intensive and/or insensitive post PCR detection methods. A PCR-enzyme immunoassay (PCR-EIA) would circumvent this problem. At the moment, we are not aware of a nested PCR- enzyme immunoassay (PCR-EIA) for demonstrating Cp. psittaci infection, although the method has been successfully used for C. pneumoniae detection in human respiratory specimens [20, 21].
The objective of the present study was to develop and evaluate a rapid and simple EIA for semi-quantitative detection of the amplified Cp. psittaci outer membrane protein A (ompA) gene, included with an internal inhibition control to eliminate possible false positive results during field sample analysis.
In the fall of 2001, 200 fattening turkeys from 10 different farms in Belgium (8 farms) or in Northern France (2 farms) were examined at slaughter for the presence of Cp. psittaci. All turkeys had been vaccinated against Newcastle disease (NCD) (Nobilis® ND LaSota; Intervet International, Boxmeer, The Netherlands) and in 7 out of 10 farms turkeys had also been vaccinated against APV (Nobilis® RTV; Intervet International). Farmers provided information about clinical symptoms throughout the rearing period. All farms had experienced one or more periods of respiratory disease.
Pharyngeal swabs were collected from 20 ad randomly selected turkeys on each turkey farm. Of each turkey there was taken 1 sample by using cotton tipped aluminium shafted swabs (Fiers, Kuurne, Belgium) in Cp. psittaci transport medium  consisting of: 0.2 M sucrose (VWR International, Haasrode, Belgium); 0.015 M Na2HPO4 (VWR International), 0.01 M NaH2PO4 (VWR International) and 20% inactivated foetal calf serum (Integro, Leuvenheim, The Netherlands). Swabs were shaken vigorously for 1 hour and centrifuged (10 min, 2790 × g, 4°C). One millilitre of supernatant was provided with 1% streptomycin sulphate (10 mg/ml; Invitrogen), 2% vancomycin (5 mg/ml; Glaxo Smith Kline) and 1.6% fungizone (250μl/ml; Invitrogen) and subsequently used for Cp. psittaci isolation.
Generation of the internal control
Oligonucleotides used in this study
Sense outer 16 rRNA
ACG GAA TAA TGA CTT CGG
Anti-sense outer 16S rRNA
TAC CTG GTA CGC TCA ATT
Sense inner 16S rRNA
ATA ATG ACT TCG GTT GTT ATT
Anti-sense inner 16S rRNA
TGT TTT AGA TGC CTA AAC AT
GCC ACG TGC GTC TGC AAC ACT CAA ATA TC
GGC ACG TGC AGT TGT AAG AAG TCA GAG T
Sense outer ompA
CCT GTA GGG AAC CCA GCT GAA
Anti-sense outer ompA
GGT TGA GCA ATG CGG ATA GTA T
Fluorescein-sense inner ompA
GCA GGA TAC TAC GGA GA
Biotin-antisense inner ompA
GGA ACT CAG CTC CTA AAG
Positive clones were grown overnight in 4 ml LB medium containing ampicilin (100 μg/ml) and subjected to the Qiaprep Spin Miniprep kit (Qiagen) to obtain purified plasmid. Using BbrpI, the 231 bp fragment was cut out of the pPCR-script™ Amp SK (+) vector and ligated into the dephosphorylated Bbrp1 site, situated within the ompA gene of the pcDNA1::MOMP vector . Thus, the Bbrp1 restriction site is located within the target sequence of the inner primers and subsequently, nested PCR amplification of the inhibition control resulted in a PCR product of 703 bp (fig. 1). E. coli strain MC1061/P3 was transfected by electroporation (Gene Pulser, Bio-Rad). Again, selected clones were subjected to PCR clone analysis to asses the presence of the insert and its sequence was determined by the dideoxy chain terminating method, as described above.
Preparation of positive control DNA
Cp. psittaci strains genotype A to F strains were propagated in cycloheximide-treated BGM cells, as described elsewhere . Bacteria were harvested at approximately 72 hours by disrupting the cells by subsequent freezing and thawing, followed by sonication and differential centrifugation (Urografin 76%). Purified elementary bodies were pelleted, washed, resuspended in sucrose-phosphate-glutamate buffer, and stored in aliquots at -70°C. For determination of bacterial titres, BGM monolayers grown on glass cover slips (Chlamydia Trac Bottles, International Medical) were infected and stained by the IMAGEN™ direct immunofluorescence assay . Inclusion forming units (IFU) were determined by counting the numbers of inclusions cultured in duplicate in Chlamydia Trac Bottles using 10-fold serial dilutions of purified EBs. Cp. psittaci titres were expressed as IFU per millilitre and IFU quantitated in this manner were used as the positive-control DNA in PCR assays.
Clinical specimens included pharyngeal swabs from turkeys taken at slaughter. These specimens as well as positive control DNA were prepared for ompA nested PCR-EIA by the STD DNA extraction method, performed as followed: Cp. psittaci suspensions or turkey specimens were pelleted at 13,000 x g, resuspended in 198 μl STD buffer (0.01 M Tris-HCl [pH 8.3], 0.05 M KCl, 0.0025 M MgCl2.6H20, 0.5% Tween20) and 2 μl proteinase K (20 mg/ml stock solution; Sigma Chemical Co.). The specimens were incubated at 56°C for one hour and subsequently heated at 100°C for 10 min. Samples for both PCR's were prepared in a class II laminar flow hood, and amplification and analysis of PCR products were performed in separate locations.
The nested ompA PCR-EIA was developed using external and internal primers (table 1) generating a biotin-fluorescein dual labelled internal PCR product of 472 bp. Both inner and outer sense primers are located within the first conserved domain (CD1) of ompA, whereas the inner anti-sense primer is located in CD3 and the outer anti-sense primers overlaps CD4 and variable domain 4 (fig. 2). First round PCR occurred in 50 mM KCl, 20 mM Tris-HCl (pH 8.3), 2 mM MgCl2, 0.1% Tween20, 200 μM each dNTP, 1.25 μM each external primer (table 1) and 0.1 U SuperTaq polymerase (5 U/μl). After an initial denaturation at 95°C for 5 minutes, 20 cycles of one min at 95°C, two min at 59°C and three min at 72°C, with a final extension at 72°C for 5 min were performed. Second round amplification was performed under similar conditions, using labelled internal primers (each 10 μM; table 1), adapted annealing temperature (47°C) and adapted number of cycles (25). Subsequently, nested PCR generated a fluorescein/biotin dual-labelled product of 472 bp. To minimize false-positive results, each step of the nested PCR was performed in physically separated places.
To allow colorimetric detection of the ompA PCR products, 50 μl of the PCR product diluted 1/10 in PBS supplemented with 3% BSA was transferred in duplicate to streptavidin-coated microtiter plates (2 μg/well for 3 hours at 37°C) and incubated at 37°C for one hour. Non-specific binding places were blocked overnight (4°C) with 5% BSA in PBS. Subsequently, the plates were washed twice with PBS and incubated (1 hour, 37°C) with a horseradish peroxidase labelled anti-fluorescein antibody (Invitrogen), diluted 1/1000 in PBS supplemented with 3% BSA. Following incubating and washing with PBS, the ABTS substrate solution (2,2' azino-di-3-ethylbenzothiazoline sulphonate, KPL) was added to the wells. Absorbencies were read at 450 nm after incubating for 30 minutes at 37°C (TiterTek MultiskanR Plus, MKII, TechGen Internatonal). Three positive controls consisting of serial 10-fold dilutions of PCR products generated from 5 IFU of Cp. psittaci and five negative controls (water) were included in each assay. Results were positive if the absorbance exceeded the cut off value of the mean of negative controls plus three times the standard deviation. Nested PCR-EIA negative samples were re-tested after adding 10 ng internal inhibition control and visualized by gel electrophoresis to assess possible inhibition.
Cp. psittaci reference strains
USA, New Jersey
Homo sapiens a
16S-rRNA nested PCR – gel electrophoresis
The performance of the ompA nested PCR-EIA was compared to those of isolation and another nested PCR, targeting the 16S rRNA gene . Cp. psittaci suspensions or turkey specimens were prepared for PCR by the QiaAmp Blood kit (Qiagen Inc., Chatworth, Califormia) adapted by . Genus-specific first-step primers and species-specific second step primers generated PCR products of 436 bp and 127 bp, respectively (table 1). Amplification products were visualized by gel electrophoresis (1.5% Nusieve GTG agarose, FMC Bioproducts, Rockland, Maine). PCR negatives were spiked with 5 IFU of Cp. psittaci to control for the presence of inhibitors. The limit of detection of this 16S-rRNA-based PCR was 5 IFU as previously described . Samples for both PCR's were prepared in a class II laminar flow hood, and amplification and analysis of PCR products were each performed in separate locations.
Comparison to Cp. psittaciisolation
Pharyngeal swabs were examined for the presence of viable Cp. psittaci by isolation in cycloheximide-treated Buffalo Green Monkey (BGM) cells. Swabs were shaken at 4°C for 1 hour and centrifuged (10 minutes, 2790 × g, 4°C). The supernatant was used for Cp. psittaci isolation in BGM cells and subsequent identification using the IMAGEN™ direct immunofluorescence assay (DakoCytomation, Denmark), as previously described . All inoculated monolayers were stained at 6 days post inoculation. Inclusion-negative cultures were passaged once. After adding an equal volume of sucrose phosphate glutamate (SPG; ) and freezing at -80°C, cultures were thawed, cell suspensions were sonicated and centrifuged once (2000 x g). Supernatant was inoculated in duplicate onto new BGM monolayers as described elsewhere . Staining was performed at 3, and if negative at 6 days post inoculation.
A specimen was considered positive if culture positive. In addition, a culture-negative, but 16S rRNA-based PCR positive specimen was considered to be a true positive only if it could be verified by ompA-based PCR.
Development of the nested PCR-EIA
Amplification of chlamydial DNA and the internal inhibition control was achieved with the ompA inner and outer primer sets, as the additional DNA fragment for the inhibition control was inserted within the target sequence of the ompA inner primer set. Therefore, the nested PCR amplification of Cp. psittaci cultures or inhibitory substance-free clinical specimens, which were positive for Cp. psittaci exhibited two bands on ethidium-stained agarose gel electrophoresis: one band (472 bp) diagnostic for Cp. psittaci and a control band (703 bp) for the internal inhibition control (fig 3). Inhibitory substance-free clinical specimens negative for Cp. psittaci contained only the control band, indicating that no detectable inhibitors were present and that biochemical conditions were optimal for PCR amplifications. When inhibitory substances were present in field samples, no bands were detected on ethidium-stained agarose gel. Adding 10 ng of inhibition control to the nested PCR mixture was determined as the optimal condition to assess inhibition in field samples (fig 3).
The nested PCR-EIA was able to detect al 6 tested Cp. psittaci reference strains (table 2), whereas strains of Chlamydia trachomatis, Chlamydophila pneumoniae, Chlamydophila abortus and Chlamydophila felis remained undetected. Furthermore, avian respiratory tract tissue originating from Cp. psittaci negative specific-pathogen-free turkeys (CNEVA, Ploufragan, France) and a wide range of non-chlamydial bacteria were tested and showed no cross-reactivity with: Acinetobacter species, Aspergillus flavus, Candida albicans, Enterococcus faecelis, Escherichia coli, Klebsiella species, Mycobacterium avium, Mycoplasma gallisepticum, Mycoplasma meleagridis, Ornithobacterium rhinotracheale, Pasteurella species, Proteus mirabilis, Pseudomonas species, Salmonella enteritidis, Salmonella gallinarum, Salmonella pullorum, Staphylococcus species, Streptococcus species and Xanthomonas maltophila. A Cp. psittaci positive control of 1 IFU was included in every test to verify that the PCR was working.
Analysis of pharyngeal specimens
Results of nested PCR's on turkey pharyngeal specimens compared to isolation as a reference test
16S rRNA PCR
Referring to isolation as a reference, all 10 examined farms were Cp. psittaci positive at slaughter. The same was true when looking at the ompA nested PCR results. Although apparently less sensitive, the 16S rRNA PCR detected Cp. psittaci in 50% of the examined farms.
A nested PCR-EIA based on the detection of the ompA gene was developed and evaluated for the diagnosis of chlamydiosis in turkeys. Nested PCR resulted in a 5' fluorescein and 3' biotin labelled ompA fragment of 472 bp which was subsequently detected in an enzyme immunoassay. Although the designed inner and outer anti-sense primers showed few nucleotide mismatches as compared to the ompA sequences of Cp. psittaci genotype C, D and F reference strains, amplification of Cp. psittaci genotypes A to F strains consistently resulted in the anticipated nested PCR-EIA product. The nested PCR-EIA was 100% specific as all Cp. psittaci genotypes were detected, but no C. trachomatis, C. pneumoniae, C. abortus or C. felis DNA. Additionally, no cross-reactivity was observed with other bacterial respiratory pathogens commonly found in the avian respiratory tract or with turkey respiratory tract DNA.
Nested PCR was chosen in order to obtain high sensitivity and specificity. Amplification of internal control DNA helped us in confirming true-negative PCR results by ruling out the presence of inhibitors of DNA amplification. Adding 10 ng of the internal inhibition control did not comprise sensitivity, as 10-2 IFU of all Cp. psittaci genotype reference strains was detected. However, when field samples, which tested negative in the nested PCR-EIA were spiked with the tenfold DNA dilutions, sensitivity decreased to 10-1 IFU, probably due to the higher amount of background DNA.
In the present study, 200 commercial turkeys, originating from 10 different farms in Belgium (8 farms) or Northern France (2 farms) were sampled at slaughter to examine for the presence of Cp. psittaci. Isolation in BGM cells revealed 74 (37%) positives. Application of the ompA nested PCR-EIA on pharyngeal DNA could confirm all culture positive results. Moreover, the ompA nested PCR-EIA detected 31 additional positives, resulting in a total of 105 (52.5%) Cp. psittaci positive turkeys. However, 29 (23.8%) of the 105 PCR-EIA positives were initially negative by the EIA and during retesting, when the internal control was added to the PCR mix, they demonstrated inhibition lacking the internal control band on an EtBr stained agarose gel. Yet, 17 samples became positive after prior 1/10 dilution of the specimen in PCR buffer. Moreover, after phenol-chloroform extraction and ethanol precipitation all but two of the sample became positive. Those two samples could not be diagnosed by the ompA nested PCR-EIA, as inhibitory substances could not be removed. Culture and 16S rRNA nested PCR for those 2 samples were also negative. However as the latter two tests have shown to be less sensitive and consequently, the presence or absence of Cp. psittaci in these 2 samples cannot be conclude. The present results clearly demonstrate the importance of using an internal control to help identify true-negatives when examining turkey pharyngeal swabs, as inhibition of DNA amplification seem to occur rather frequently in these specimens. Notwithstanding the presence of polymerase inhibitors, pharyngeal swabs still remain the first choice for sampling live birds. Pharyngeal specimens are preferred as cloacal shedding of Cp. psittaci is intermittent and, in contrast, the respiratory tract appears to be the last system to be cleared of infection. Furthermore, pathogenesis of Cp. psittaci revealed that lateral nasal glands can be infected for a extended period . Secretions of these glands function to keep the mucosa moist and drainage of infected secretions into the pharyngeal cavity can serve as source for Cp. psittaci. Also secretions from the lung are expelled into the pharyngeal area .
Surprisingly, the 16S rRNA-based PCR could only confirm 13 out of 105 ompA nested PCR-EIA positives revealing only 6.5% positive turkeys. Discrepant results were probably not due to different extraction methods, as 30 16S-rRNA negative samples remained negative even after using the STD extraction method as for the ompA - based nested PCR.
The PCR-EIA turned out to be more sensitive than isolation in cell culture and more sensitive than the 16S rRNA-based nested PCR. The 16S-rRNA PCR primers have already been shown to be sensitive (5 IFU) and specific . The ompA nested PCR-EIA is approximately 50 times more sensitive than the 16S-rRNA based PCR. The sensitivity of the nested PCR-EIA was also superior to isolation of Cp. psittaci in cell culture, which is in agreement with other reports [28–30]. Moreover, the nested PCR-EIA is easy, rapid, and less labour-intensive than isolation and non-viable Chlamydiaceae can be detected, due to the relative high stability of DNA. This allows less stringent demands on collection, transportation and storage of the samples, making the nested PCR-EIA an ideal diagnostic method for monitoring turkey flocks during processing.
Referring to isolation as a reference, all 10 examined farms were Cp. psittaci positive at slaughter. The same was true when looking at the ompA nested PCR results. Although apparently less sensitive, the 16S rRNA PCR still detected Cp. psittaci in 50% of the examined farms. Results are in concordance with previous reports, demonstrating the high prevalence of Cp. psittaci in Belgian turkeys . Public health is here of concern, as poultry workers, veterinary surgeons and slaughterhouse employees are at risk of becoming infected by this zoonotic agent [9, 15, 16, 19, 31–33]. In the present study, 37% of the turkeys were still shedding infectious Cp. psittaci, when transported to the slaughterhouse posing a threat to human health. Thus, the presented ompA nested PCR-EIA will help to facilitate the diagnosis of Cp. psittaci infections in both poultry and man.
This work was supported by project S6037-section 2 grant from the Belgian Ministry of Public Health and Intervet International N.V. (Boxmeer, The Netherlands).
R. Pensaert, A. Doop, Ph. Deloddere and D. Gilliaert are acknowledged for their assistance in the slaughterhouse (Volys-Star, Lendelede, Belgium). N. Boon and W. Verstraete (Department of Biochemical and Microbial Technology, Ghent University) and E. de Graef and F. Haesebrouck (Department of Veterinary Bacteriology and Mycology, Ghent University) for the bacterial strains used for specificity testing.
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