Joint United Nations Programme on HIV/AIDS (UNAIDS) and World Health Organization (WHO): AIDS epidemic update. 2009, Geneva, Switzerland, 100-
Google Scholar
Bastos FI, Caceres C, Galvao J, Veras MA, Castilho EA: AIDS in Latin America: assessing the current status of the epidemic and the ongoing response. Int J Epidemiol. 2008, 37 (4): 729-737.
Article
PubMed
Google Scholar
PN - DST/AIDS Ministério da Saúde: Boletim Epidemiológico AIDS DST. Ministério da Saúde, Janeiro a Junho de 2009. 2009
Google Scholar
Bastos FI, Nunn A, Hacker MA, Malta M, Szwarcwald CL: AIDS in Brazil: The challenge and the response. Celentano DD & Beyrer C: Public Health Aspects of HIV/AIDS in Developing Countries: Epidemiology, Prevention and Care. 2008, New York: Springer International, 629-654.
Google Scholar
PN - DST/AIDS Ministério da Saúde: Contribution of the Test and Counselling Centers to Universalize the Diagnosis and Guarantee the Equality in the Access to the Services. Ministério da Saúde. 2008
Google Scholar
Janssen RS, Satten GA, Stramer SL, Rawal BD, O'Brien TR, Weiblen BJ, Hecht FM, Jack N, Cleghorn FR, Kahn JO, Chesney MA, Busch MP: New testing strategy to detect early HIV-1 infection for use in incidence estimates and for clinical and prevention purposes. Jama. 1998, 280 (1): 42-48. 10.1001/jama.280.1.42.
Article
CAS
PubMed
Google Scholar
Parekh BS, McDougal JS: Application of laboratory methods for estimation of HIV-1 incidence. Indian J Med Res. 2005, 121 (4): 510-518.
CAS
PubMed
Google Scholar
Murphy G, Parry JV: Assays for the detection of recent infections with human immunodeficiency virus type 1. Euro Surveill. 2008, 13 (36): 314-320.
Google Scholar
Parekh BS, Kennedy MS, Dobbs T, Pau CP, Byers R, Green T, Hu DJ, Vanichseni S, Young NL, Choopanya K, Mastro TD, McDougal JS: Quantitative detection of increasing HIV type 1 antibodies after seroconversion: a simple assay for detecting recent HIV infection and estimating incidence. AIDS Res Hum Retroviruses. 2002, 18 (4): 295-307. 10.1089/088922202753472874.
Article
CAS
PubMed
Google Scholar
Dobbs T, Kennedy S, Pau CP, McDougal JS, Parekh BS: Performance characteristics of the immunoglobulin G-capture BED-enzyme immunoassay, an assay to detect recent human immunodeficiency virus type 1 seroconversion. J Clin Microbiol. 2004, 42 (6): 2623-2628. 10.1128/JCM.42.6.2623-2628.2004.
Article
CAS
PubMed
PubMed Central
Google Scholar
UNAIDS Reference Group on estimates, modelling and projections: Statement on the use of the BED assay for the estimation of HIV-1 incidence for surveillance or epidemic monitoring. Wkly Epidemiol Rec. 2006, 81 (4): 40-
Google Scholar
McDougal JS, Parekh BS, Peterson ML, Branson BM, Dobbs T, Ackers M, Gurwith M: Comparison of HIV type 1 incidence observed during longitudinal follow-up with incidence estimated by cross-sectional analysis using the BED capture enzyme immunoassay. AIDS Res Hum Retroviruses. 2006, 22 (10): 945-952. 10.1089/aid.2006.22.945.
Article
CAS
PubMed
Google Scholar
Hargrove JW, Humphrey JH, Mutasa K, Parekh BS, McDougal JS, Ntozini R, Chidawanyika H, Moulton LH, Ward B, Nathoo K, Iliff PJ, Kopp E: Improved HIV-1 incidence estimates using the BED capture enzyme immunoassay. AIDS. 2008, 22 (4): 511-518. 10.1097/QAD.0b013e3282f2a960.
Article
PubMed
Google Scholar
Sambrook J, Fritsch EF, Maniatis T: Molecular Cloning. Cold Spring Harbor Laboratory, NY. 1989, 458-
Google Scholar
Delwart EL, Shpaer EG, Louwagie J, McCutchan FE, Grez M, Rübsamen-Waigmann H, Mullins JI: Genetic Relationships Determined by a DNA Heteroduplex Mobility Assay: Analysis of HIV-1 env genes. Science. 1993, 262: 1257-1261. 10.1126/science.8235655.
Article
CAS
PubMed
Google Scholar
Eyer-Silva WA, Morgado MG: A genotyping study of human immunodeficiency virus type-1 drug resistance in a small Brazilian municipality. Mem Inst Oswaldo Cruz. 2005, 100 (8): 869-873. 10.1590/S0074-02762005000800008.
Article
CAS
PubMed
Google Scholar
Eyer-Silva WA, Morgado MG: Molecular epidemiology of HIV-1 infection in a small Brazilian county: usefulness of envelope and polymerase sequences to epidemiologic studies. J Acquir Immune Defic Syndr. 2006, 41 (5): 664-670. 10.1097/01.qai.0000194736.66322.02.
Article
PubMed
Google Scholar
Burland TG: DNASTAR's Lasergene sequence analysis software. Methods Mol Biol. 2000, 132: 71-91.
CAS
PubMed
Google Scholar
Thompson JD, Higgins DG, Gibson TJ: Clustal W: Improving the sensitivity of progressive multiple sequence alignment, through sequence weighting, position-sepecific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22: 4673-4680. 10.1093/nar/22.22.4673.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kumar S, Tamura K, Nei M: MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform. 2004, 5 (2): 150-163. 10.1093/bib/5.2.150.
Article
CAS
PubMed
Google Scholar
Page RD: Treeview: an application to display phylogenetic trees on personal computers. Comput Appl Biosci. 1996, 12 (4): 357-8.
CAS
PubMed
Google Scholar
de Oliveira T, Deforche K, Cassol S, Salminen M, Paraskevis D, Seebregts C, Snoeck J, van Rensburg EJ, Wensing AM, van de Vijver DA, Boucher CA, Camacho R, Vandamme AM: An automated genotyping system for analysis of HIV-1 and other microbial sequences. Bioinformatics. 2005, 21 (19): 3797-3800. 10.1093/bioinformatics/bti607.
Article
CAS
PubMed
Google Scholar
Guimarães ML, Eyer-Silva WA, Couto-Fernandez JC, Morgado MG: Identification of two new CRF_BF in Rio de Janeiro State, Brazil. AIDS. 2008, 22 (3): 433-5. 10.1097/QAD.0b013e3282f47ad0.
Article
PubMed
Google Scholar
Schechter M, do Lago RF, de Melo MF, Sheppard HW, Guimarães NC, Moreira RI, Faulhaber JC, Batista S, Harrison LH: Identification of a high-risk heterosexual population for HIV prevention trials in Rio de Janeiro, Brazil. Projeto Praça Onze Study Group. J Acquir Immune Defic Syndr. 2000, 24 (2): 175-7.
Article
CAS
PubMed
Google Scholar
Barroso PF, Harrison LH, de Fatima Melo M, Batista SM, da Silva Bastos M, da Rosa Faulhaber JC, Moreira RI, do Lago RF, Schechter M: Identification of a high-risk heterosexual cohort for HIV vaccine efficacy trials in Rio de Janeiro, Brazil, using a sensitive/less-sensitive assay: an update. J Acquir Immune Defic Syndr. 2004, 36 (3): 880-881.
Article
PubMed
Google Scholar
Alves K, Shafer KP, Caseiro M, Rutherford G, Falcao ME, Sucupira MC, Busch MP, Rawal BD, Diaz RS: Risk factors for incident HIV infection among anonymous HIV testing site clients in Santos, Brazil: 1996-1999. J Acquir Immune Defic Syndr. 2003, 32 (5): 551-559. 10.1097/00126334-200304150-00014.
Article
PubMed
Google Scholar
Bassichetto KC, Bergamaschi DP, Veras MA, Sucupira MC, Mesquita F, Diaz RS: Estimating HIV-1 incidence using the serologic testing algorithm for recent HIV infections at HIV counseling and testing centers in the city of São Paulo, Brazil. Braz J Infect Dis. 2009, 13 (1): 9-12. 10.1590/S1413-86702009000100004.
Article
PubMed
Google Scholar
Mello M, Chinaglia M: Assessment of Risk Factors for HIV Infection Among Men Who Have Sex With Men in the Metropolitan Area Of Campinas City, Brazil, Using Respondent-Driven Sampling. National STD/AIDS Program/Brazil. 2008, 1-77.
Google Scholar
DST/AIDS Ministério da Saúde: Plano Nacional de Enfrentamento da Epidemia de AIDS e das DST entre Gays, HSH e Travestis. Ministério da Saúde. 2008, In portuguese
Google Scholar
Loschen S, Batzing-Feigenbaum J, Poggensee G, Cordes C, Hintsche B, Rausch M, Dupke S, Gohlke-Micknis S, Rodig J, Hamouda O, Kucherer C: Comparison of the human immunodeficiency virus (HIV) type 1-specific immunoglobulin G capture enzyme-linked immunosorbent assay and the avidity index method for identification of recent HIV infections. J Clin Microbiol. 2008, 46 (1): 341-345. 10.1128/JCM.01055-07.
Article
PubMed
Google Scholar
Hall HI, Song R, Rhodes P, Prejean J, An Q, Lee LM, Karon J, Brookmeyer R, Kaplan EH, McKenna MT, Janssen RS: Estimation of HIV incidence in the United States. Jama. 2008, 300 (5): 520-529. 10.1001/jama.300.5.520.
Article
CAS
PubMed
PubMed Central
Google Scholar
Laeyendecker O, Rothman RE, Henson C, Horne BJ, Ketlogetswe KS, Kraus CK, Shahan J, Kelen GD, Quinn TC: The effect of viral suppression on cross-sectional incidence testing in the Johns Hopkins hospital emergency department. J Acquir Immune Defic Syndr. 2008, 48 (2): 211-5. 10.1097/QAI.0b013e3181743980.
Article
PubMed
PubMed Central
Google Scholar
Hayashida T, Gatanaga H, Tanuma J, Oka S: Effects of low HIV type 1 load and antiretroviral treatment on IgG-capture BED-enzyme immunoassay. AIDS Res Hum Retroviruses. 2008, 24 (3): 495-498. 10.1089/aid.2007.0150.
Article
CAS
PubMed
Google Scholar
Brookmeyer R: Should biomarker estimates of HIV incidence be adjusted?. AIDS. 2009, 23 (4): 485-91. 10.1097/QAD.0b013e3283269e28.
Article
PubMed
Google Scholar
Hargrove , John W: BED estimates of HIV incidence must be adjusted. AIDS. 2009, 23 (15): 2061-2062. 10.1097/QAD.0b013e32832f3d8b.
Article
PubMed
Google Scholar
Welte A, McWalter TA, Bärnighausen T: Reply to 'Should biomarker estimates of HIV incidence be adjusted?'. AIDS. 2009, 23 (15): 2062-2063. 10.1097/QAD.0b013e32832eff59.
Article
PubMed
PubMed Central
Google Scholar
McDougal , J Steven: BED estimates of HIV incidence must be adjusted. AIDS. 2009, 23 (15): 2064-2065. 10.1097/QAD.0b013e32832eff6e.
Article
PubMed
Google Scholar
Brookmeyer , Ron : Response to correspondence on 'Should Biomarker Estimates of HIV Incidence be Adjusted?'. AIDS. 2009, 23 (15): 2066-2068. 10.1097/QAD.0b013e32832f3dbb.
Article
Google Scholar
Bastos FI, Bongertz V, Teixeira SL, Morgado MG, Hacker MA: Is human immunodeficiency virus/acquired immunodeficiency syndrome decreasing among Brazilian injection drug users? Recent findings and how to interpret them. Mem Inst Oswaldo Cruz. 2005, 100 (1): 91-6. 10.1590/S0074-02762005000100017.
Article
PubMed
Google Scholar
Malta M, Magnanini MMF, Mello MB, Pascom ARP, Linhares Y, Bastos FI: HIV prevalence among female sex workers, drug users and men who have sex with men in Brazil: A Systematic Review and Meta-analysis. BMC Public Health. 2010, 10: 317-10.1186/1471-2458-10-317.
Article
PubMed
PubMed Central
Google Scholar
Scuracchio PS, Poli MC, Lemos MM, Oliveira Filho AG, Salles NA, Chamone DA, Magri M, Cavalcante NJ, Collela R: Detection of HIV-1 infection in blood donors during the immunological window period using the nucleic acid-amplification technology. Transfus Med. 2007, 17 (3): 200-4. 10.1111/j.1365-3148.2007.00748.x.
Article
CAS
PubMed
Google Scholar
Morgado MG, Guimarães ML, Galvão-Castro B: HIV-1 polymorphism: a challenge for vaccine development - a review. Mem Inst Oswaldo Cruz. 2002, 97 (2): 143-50. 10.1590/S0074-02762002000200001.
Article
CAS
PubMed
Google Scholar
Sá-Ferreira JA, Brindeiro PA, Chequer-Fernandez S, Tanuri A, Morgado MG: Human immunodeficiency virus-1 subtypes and antiretroviral drug resistance profiles among drug-naïve Brazilian blood donors. Transfusion. 2007, 47 (1): 97-102. 10.1111/j.1537-2995.2007.01069.x.
Article
PubMed
Google Scholar
de Sa-Filho DJ, Ambar RF, Duarte NB, Matias RB, Candido V, Gagliani LH, Caseiro MM: HIV type 1 diversity from newly diagnosed patients in Santos metropolitan area/Brazil. AIDS Res Hum Retroviruses. 2009, 25 (9): 925-9. 10.1089/aid.2009.0073.
Article
CAS
PubMed
Google Scholar