Table 1 Detected reassortment and recombination strains by RDP5
From: Spatio-temporal spread and evolution of Lassa virus in West Africa
Type | Strain | Major parent | Minor parent | P value | ||||
|---|---|---|---|---|---|---|---|---|
RDP | GENECONV | Bootscan | Maxchi | Chimaera | ||||
reassortment | LASV_3625_V | BA366_ IVb | LASV_3604_V | 8.16E-213 | 2.37E-167 | 8.95E-201 | 2.74E-58 | 2.86E-54 |
LASV_3523_V | Mad39_ IVb | LASV_3604_V | 3.27E-190 | 1.05E-139 | NS | 8.71E-59 | 4.96E-53 | |
LASV_3713_V | G1529_ IVb | Mad63_ IVb | 3.32E-160 | 2.09E-105 | 5.48E-170 | 2.45E-54 | 1.30E-22 | |
LASV_3715_V | G2431_ IVb | Mad69_ IVb | 6.42E-156 | 4.59E-108 | 1.63E-179 | 8.40E-56 | 7.49E-23 | |
LASV250_IIg [12] | IRR-006_IIg | LASV1015_IIg | 2.21E-50 | 5.84E-46 | 2.51E-53 | 1.68E-21 | 5.89E-19 | |
IRR-016_IIg | LASV0070_IIg | ISTH1096_IIg | 2.49E-36 | 5.24E-04 | 1.87E-23 | 3.48E-24 | 2.76E-19 | |
LASV0159_IIg | ISTH-0664_IIg | LASV0104_IIg | 2.80E-07 | 4.06E-02 | 6.81E-05 | 4.37E-06 | 1.08E-06 | |
LASV003_IIg | LASV241_IIg | LASV242_IIg | 1.19E-06 | NS | NS | 1.52E-05 | 6.33E-06 | |
LASV263_IIg [12] | LASV975_IIg | IRR-017_IIg | 7.64E-05 | NS | NS | 1.72E-04 | 1.44E-02 | |
recombination | LASV_3625_V | BA366_ IVb | LASV_3604_V | 9.25E-71 | 8.66E-57 | 4.44E-65 | 1.94E-12 | 3.69E-11 |
LASV_3713_V | Mad63_ IVb | Bamba-R114_V | 2.93E-57 | 1.44E-26 | 1.96E-54 | 8.56E-12 | 3.60E-09 | |
LASV_3715_V | Mad69_ IVb | Bamba-R114_V | 5.20E-54 | 6.03E-21 | 6.17E-43 | 2.46E-12 | 5.78E-09 | |
LASV_3523_V | Mad39_V | LASV_3604_V | 1.23E-50 | 1.14E-28 | 1.15E-48 | 2.51E-09 | 3.27E-07 | |