Table 3 Number of Genus detected by mNGS

Bacteria

Nocardia as sole agent

2

Nocardia as sole agent

2

Nocardia

12

Nocardia

7

Actinomyces

4

Rothia

1

Haemophilus

2

Streptococcus

2

Streptococcus

2

Corynebacterium

2

Porphyromonas

2

Veillonella

1

Pseudomonas

1

Haemophilus

2

Megasphaera

1

Prevotella

1

Klebsiella

1

Neisseria

1

Prevotella

1

Pseudomonas

1

Campylobacter

1

Capnocytophaga

1

Veillonella

1

Acinetobacter

1

Anaeroglobus

1

Porphyromonas

1

Stenotrophomonas

1

Olsenella

1

Mycobacterium

1

Streptococcus

1

Parvimonas

1

Bacteroides

1

Fretibacterium

1

Fungus

Nakaseomyces

1

Aspergillus

1

Candida

1

Penicillium

1

Pneumocystis

1

Candida

1

Virus

Human gammaherpesvirus 4(EBV)

2

Human betaherpesvirus 5(CMV)

2

Human betaherpesvirus 5(CMV)

2

Humangammaher pesvirus4(EBV)

1

Human betaherpesvirus 6B

1

Human alphaherpesvirus 3(Varicella zoster virus)(VZV)

1

Human alphaherpes virus 1(HSV1)

1

Others

Mycobacterium tuberculosis complex

1