Genetic characterization of two G8P[8] rotavirus strains isolated in Guangzhou, China, in 2020/21: evidence of genome reassortment

Wang, Si-Jie; Chen, Li-Na; Wang, Song-Mei; Zhou, Hong-Lu; Qiu, Chao; Jiang, Baoming; Qiu, Tian-Yi; Chen, Sheng-Li; von Seidlein, Lorenz; Wang, Xuan-Yi

doi:10.1186/s12879-022-07542-9

Table 1 Comparison of genome constellations of the G8P[8] isolates from Guangzhou with those of RVA genomes available from GenBank

From: Genetic characterization of two G8P[8] rotavirus strains isolated in Guangzhou, China, in 2020/21: evidence of genome reassortment

Strain	Origin	VP7	VP4	VP6	VP1	VP2	VP3	NSP1	NSP2	NSP3	NSP4	NSP5/6	Shared genotypes
RVA/Human-wt/CHN/GZ-0005/2021/G8P[8]	Human	G8	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2
RVA/Human-wt/CHN/GZ-0013/2021/G8P[8]	Human	G8	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2
RVA/Human-wt/THA/SSKT-269/2014/G8P[8]	Human	G8	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2	11
RVA/Human-wt/THA/SSL-55/2014/G8P[8]	Human	G8	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2	11
RVA/Human-wt/THA/SKT-457/2014/G8P[8]	Human	G8	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2	11
RVA/Human-wt/THA/PCB-85/2013/G8P[8]	Human	G8	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2	11
RVA/Human-wt/SGP/NV-16-124/2016/G8P[8]	Human	G8	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2	11
RVA/Human-wt/VNM/RVN1326/2014/G8P[8]	Human	G8	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2	11
RVA/Human-wt/JPN/17,287/2019/G8P[8]	Human	G8	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2	11
RVA/Human-wt/JPN/SO1162/2017/G8P[8]	Human	G8	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2	11
RVA/Human-wt/KOR/CAU17L-79/2017/G8P[8]	Human	G8	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2	11
RVA/Human-wt/COD/DRC88/2003/G8P[8]	Human	G8	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2	11
RVA/Human-wt/THA/DBM2017-203/2017/G9P[8]	Human	G9	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2	10
RVA/Human-wt/THA/DBM2018-291/2018/G9P[8]	Human	G9	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2	10
RVA/Human-wt/ESP/SS61921417/2015/G3P[8]	Human	G3	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2	10
RVA/Human-wt/ESP/SS96217158/2015/G3P[8]	Human	G3	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2	10
RVA/Human-wt/ESP/SS61720845/2015/G3P[8]	Human	G3	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2	10
RVA/Human-wt/TWN/2014/103-701-D022/G3P[8]	Human	G3	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H2	10
RVA/Human-tc/IND/69 M/1980/G8P[10]	Human	G8	P[10]	I2	R2	C2	M2	A2	N2	T2	E2	H2	10
RVA/Human-wt/COD/DRC86/2003/G8P[6]	Human	G8	P[6]	I2	R2	C2	M2	A2	N2	T2	E2	H2	10
RVA/Human-wt/MLI/Mali-119/2008/G8P[6]	Human	G8	P[6]	I2	R2	C2	M2	A2	N2	T2	E2	H2	10
RVA/Human-wt/UGA/MUL-13-308/2013/G8P[6]	Human	G8	P[6]	I2	R2	C2	M2	A2	N2	T2	E2	H2	10
RVA/Human-wt/MWI/BID1B9/2012/G8P[4]	Human	G8	P[4]	I2	R2	C2	M2	A2	N2	T2	E2	H2	10
RVA/Human-wt/KEN/KDH1111/2011/G8P[4]	Human	G8	P[4]	I2	R2	C2	M2	A2	N2	T2	E2	H2	10
RVA/Human-wt/USA/2,009,727,045/2009/G8P[4]	Human	G8	P[4]	I2	R2	C2	M2	A2	N2	T2	E2	H2	10
RVA/Human-wt/THA/DBM2018-105/2018/G2P[4]	Human	G2	P[4]	I2	R2	C2	M2	A2	N2	T2	E2	H2	9
RVA/Human-tc/USA/DS-1/1976/G2P[4]	Human	G2	P[4]	I2	R2	C2	M2	A2	N2	T2	E2	H2	9
RVA/Human-wt/GHA/GH019-08/2008/G8P[6]	Human	G8	P[6]	I2	R2	C2	M2	A2	N2	T2	E2	H3	9
RVA/Human-wt/PAK419/2016/G3P[4]	Human	G3	P[8]	I2	R2	C2	M2	A2	N2	T1	E2	H2	9
RVA/Human-wt/USA/2,014,737,554/2014/G1P[8]	Human	G1	P[8]	I2	R2	C2	M2	A2	N2	T2	E2	H1	9
RVA/Cow-wt/ZAF/1604/2007/G8P[1]	Bovine	G8	P[1]	I2	R2	C2	M2	A3	N2	T6	E2	H3	7
RVA/Cow-tc/THA/A5-13/1988/G8P[1]	Bovine	G8	P[1]	I2	R2	C2	M2	A14	N2	T6	E2	H3	7
RVA/Human-wt/US/2,012,841,174/2012/G8P[14]	Human	G8	P[14]	I2	R3	C2	M2	A3	N2	T6	E2	H3	6
RVA/Human-wt/HRV/CR2006/2006/G8P[8]	Human	G8	P[8]	I1	R1	C1	M1	A1	N1	T1	E1	H1	2
RVA/Human-wt/TUN/6862/2000/G8P[8]	Human	G8	P[8]	I1	R1	C1	M1	A1	N1	T1	E1	H1	2
RVA/Human-wt/CHN/km15119/2016/G9P[8]	Human	G9	P[8]	I1	R1	C1	M1	A1	N1	T1	E1	H1	1
RVA/Human-wt/MLI/Mali-138/2008/G9P[8]	Human	G9	P[8]	I1	R1	C1	M1	A1	N1	T1	E1	H1	1
RVA/Human-lab/USA/Wa/2020/G1P[8]	Human	G1	P[8]	I1	R1	C1	M1	A1	N1	T1	E1	H1	1
RVA/Human-wt/ZAF/UFS-NGS-MRC-DPRU4269/2002/G1P[8]	Human	G1	P[8]	I1	R1	C1	M1	A1	N1	T1	E1	H1	1
RVA/Human-wt/CHN/E5365/2017/G1P[8]	Human	G1	P[8]	I1	R1	C1	M1	A1	N1	T1	E1	H1	1
RVA/Human-wt/CHN/E5867/2018/G3P[8]	Human	G3	P[8]	I1	R1	C1	M1	A1	N1	T1	E1	H1	1
RVA/Human-wt/UGA/NSA-13-043/2013/G9P[8]	Human	G9	P[8]	I1	R1	C1	M1	A1	N1	T1	E1	H1	1
RVA/Human-wt/USA/3,000,357,125/2016/G9P[8]	Human	G9	P[8]	I1	R1	C1	M1	A1	N1	T1	E1	H1	1
RVA/Human-wt/USA/3,000,354,346/2015/G12P[8]	Human	G12	P[8]	I1	R1	C1	M1	A1	N1	T1	E1	H1	1
RVA/Human/CHN/WZ606/2013/G3P[9]	Human	G3	P[9]	I3	R3	C3	M3	A3	N3	T3	E3	H3	0
RVA/Human- tc/JPN/AU-l/1982/G3P[9]	Human	G3	P[9]	I3	R3	C3	M3	A3	N3	T3	E3	H3	0

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