Table 1 Primer sequence of 24 MIRU-VNTR loci in this study
Locus | Primer | Marker | PCR primer pairs (5’-3’) | Flank size | Repeat unit length (bp) |
|---|---|---|---|---|---|
MIRU02 | MIRU02-F | FAM | CAGGTGCCCTATCTGCTGACG | 189 | 47 |
MIRU04 | MIRU04-F | HEX | GTCAAACAGGTCACAACGAGAGGAA | 105 | 77 |
MIRU10 | MIRU10-F | TAMRA | ACCGTCTTATCGGACTGCACTATCAA | 219 | 53 |
MIRU16 | MIRU16-F | FAM | CGGGTCCAGTCCAACTACCTCAAT | 367 | 52 |
MIRU20 | MIRU20-F | HEX | CCCCTTCGAGTTAGTATCGTCGGTT | 220 | 72 |
MIRU23 | MIRU23-F | TAMRA | CGAATTCTTCGGTGGTCTCGAGT | 79 | 52 |
MIRU24 | MIRU24-F | FAM | GAAGGCTATCCGTCGATCGGTT | 312 | 53 |
MIRU26 | MIRU26-F | HEX | GCGGATAGGTCTACCGTCGAAATC | 243 | 48 |
MIRU27 | MIRU27-F | TAMRA | TCTGCTTGCCAGTAAGAGCCA | 269 | 52 |
MIRU31 | MIRU31-F | FAM | CGTCGAAGAGAGCCTCATCAATCAT | 108 | 52 |
MIRU39 | MIRU39-F | HEX | CGGTCAAGTTCAGCACCTTCTACATC | 191 | 47 |
MIRU40 | MIRU40-F | TAMRA | GATTCCAACAAGACGCAGATCAAGA | 226 | 50 |
ETRA | ETRA-F | FAM | AAATCGGTCCCATCACCTTCTTAT | 196 | 75 |
ETRB | ETRB-F | FAM | ATGGCCACCCGATACCGCTTCAGT | 347 | 57 |
ETRC | ETRC-F | HEX | CGAGAGTGGCAGTGGCGGTTATCT | 102 | 58 |
Mtub04 | Mtub04-F | HEX | GTCCAGGTTGCAAGAGATGG | 117 | 51 |
Mtub21 | Mtub21-F | TAMRA | AGATCCCAGTTGTCGTCGTC | 150 | 57 |
Mtub29 | Mtub29-F | HEX | GCCAGCCGCCGTGCATAAACCT | 392 | 57 |
Mtub30 | Mtub30-F | FAM | CTTGAAGCCCCGGTCTCATCTGT | 275 | 44 |
Mtub34 | Mtub34-F | HEX | GGTGCGCACCTGCTCCAGATAA | 323 | 54 |
Mtub39 | Mtub39-F | TAMRA | CGGTGGAGGCGATGAACGTCTTC | 284 | 52 |
QUB11b | QUB11b-F | FAM | CGTAAGGGGGATGCGGGAAATAGG | 67 | 69 |
QUB26 | QUB26-F | TAMRA | AACGCTCAGCTGTCGGAT | 153 | 111 |
QUB4156 | QUB4156-F | TAMRA | TGACCACGGATTGCTCTAGT | 563 | 59 |