Table 3 SNPs between the parent (Day 6) and the resistant (Day 12) isolates

5

184001

A

G

11

91073

T

C

Missense_variant A224G

p.His75Arg

ampD

1;6-anhydro-N-acetylmuramyl-l-alanine amidase AmpD

13

36350

A

G

Missense_variant

T614C

p.Val205Ala

yicL

Putative inner membrane transporter YicL

35

57393

A

G

Missense_variant T1645 > C

p.Cys549Arg

hemR

Hemin receptor

41

87395

CCCC

TCCA

Missense_variant 602_605delCCCCinsTCCA p.ThrPro201IleHis

mdoC

Glucan biosynthesis protein C

41

576365

G

A

54

159944

C

A

Intergenic region upstream of dusB gene