Fig. 4
From: Three transmission events of Vibrio cholerae O1 into Lusaka, Zambia
Alignment of selected variable nucleotides from Clustal. Each row is a different isolate. Invariant nucleotides are not shown. The PARSNP vcf file is in Supplemental Table 2. A) The arrow points to a single base substitution in isolate DR1, the box surrounds a series of substitutions in Zb5. B) The co-occurrence of a single base insertion, a single base deletion and multiple substitutions in Mz1. C) The boxes indicate the four possible combinations of two alleles at two loci 15,103 bases apart. The alleles are T & A and TTTTTTTCAGCGAAAT =1, &ACCCGGGGCTATTTCG =2. The genotypes T2, A2, T1 and A1 occurred in 03S, Dr1, Mz2, and Zb5, respectively (Supplemental Table 3)