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Table 2 Experimentally Mapped Peptides and Computationally Predicted Epitopes

From: Computational MHC-I epitope predictor identifies 95% of experimentally mapped HIV-1 clade A and D epitopes in a Ugandan cohort

ID Participant’s HLA Types Hit No Screening Peptide Screening Peptide HIV-1 Clade NetMHCpan4.0 9-mer Epitope Prediction NetMHCpan4.0 9-mer HLA Prediction NetMHCpan4.0% Rank MHCflurry 9-mer Epitope prediction MHCflurry 9-mer HLA prediction MHCflurry affinity (μm) NetCTL 9-mer Epitope prediction
E91 A*02:01 1 FITKGLGISYGRKKRRQR D GLGISYGRK A*0301 0.50 GLGISYGRK A*0201 0.47  
A*03:01 2 HPKVSSEVHIPLGDARLV A1 IPLGDARLV B*53:01 0.70 IPLGDARLV A*0302 24.63  
B*53:01   HPKVSSEVHIPLGDARLV A1 KVSSEVHIP B*58:02 0.60 KVSSEVHIP B*53:01 26.18  
B*58:02   HPKVSSEVHIPLGDARLV A1 SSEVHIPLG B*58:02 0.60     
Cw*04:01   HPKVSSEVHIPLGDARLV A1 VSSEVHIPL Cw*04:01 0.90 VSSEVHIPL Cw*04:01 18.48  
Cw*06:02   HPKVSSEVHIPLGDARLV A1 HPKVSSEVH B*53:01 1.20 HPKVSSEVH Cw*06:02 28.58  
E92 A*02:01 3 RKQNPEIVIYQYMDDLYV D YQYMDDLYV A*02:01 0.15 YQYMDDLYV A*02:01 0.25  
A*30:02   RKQNPEIVIYQYMDDLYV D NPEIVIYQY B*44:03 0.60 NPEIVIYQY A*30:02 4.94  
B*44:03   RKQNPEIVIYQYMDDLYV D YQYMDDLYV A*02:01 1.80 YQYMDDLYV B*44:03 8.44  
B*14:02   RKQNPEIVIYQYMDDLYV D YQYMDDLYV Cw*04:01 0.90 YQYMDDLYV Cw*04:01 1.52  
Cw*04:01   RKQNPEIVIYQYMDDLYV D YQYMDDLYV Cw*08:02 1.20 YQYMDDLYV Cw*08:02 13.26  
Cw*08:02   RKQNPEIVIYQYMDDLYV D VIYQYMDDL A*30:02 0.60 VIYQYMDDL A*30:02 2.52  
  4 ELNKRTQDFWEVQLGIPH A1 TQDFWEVQL Cw*08:02 0.40 YQYMDDLYV Cw*08:02 3.09  
   ELNKRTQDFWEVQLGIPH A1 TQDFWEVQL A*02:01 0.03 TQDFWEVQL A*02:01 19.72  
   ELNKRTQDFWEVQLGIPH A1 TQDFWEVQL Cw*08:02 1.50 TQDFWEVQL Cw*08:02 3.09  
   ELNKRTQDFWEVQLGIPH A1 ELNKRTQDF B*44:03 0.60 ELNKRTQDF B*44:03 26.56  
  5 NDIQKLVGKLNWASQIYP D KLNWASQIY A*30:02 0.50 KLNWASQIY A*30:02 0.02  
   NDIQKLVGKLNWASQIYP D KLVGKLNWA A*02:01 0.47 KLVGKLNWA A*02:01 0.32  
   NDIQKLVGKLNWASQIYP D KLNWASQIY Cw*04:01 1.80 KLNWASQIY Cw*04:01 2.34  
  6 PAIQTGSEELRSLYNTVA D GSEELRSLY A*30:02 0.40 GSEELRSLY A*30:02 0.12  
   PAIQTGSEELRSLYNTVA D SEELRSLY B*44:03 0.50 SEELRSLY B*44:03 16.25  
  7 PYNTPIFAIKKKDSTKWR A1 PYNTPIFAI Cw*04:01 1.14 PYNTPIFAI Cw*04:01 32.80  
  8 GANNSHNETFRPGGGDMR D TFRPGGGDM Cw*04:01 1.60 TFRPGGGDM Cw*04:01 1.15  
  9 GMDGPKVKQWPLTEEKIK A1 MDGPKVKQW B*44:03 0.50 MDGPKVKQW B*44:03 1.37  
  10 PLTSLKSLFGNDPLSQ D KSLFGNDPL A*02:01 1.40 KSLFGNDPL A*02:01 31.04  
   PLTSLKSLFGNDPLSQ D KSLFGNDPL Cw*08:02 1.20     
   FKGPRKIIKCFNCGKEGHI D        
  11 HERIEVKDTKEALEKI D EVKDTKEAL B*14:02 1.40     
   HERIEVKDTKEALEKI D IEVKDTKEA B*44:03 1.99 IEVKDTKEA B*44:03 13.12  
E94 A*34:02 12 KIEEIQNKSKQKTQQAAA A1 EIQNKSKQK A*34:02 1.03 EIQNKSKQK B*44:03 35.84  
A*74:01 13 NHPSCVWLEAQEEEEVGF A1 LEAQEEEEV B*44:15 1.70 LEAQEEEEV B*44:04 12.09 LEAQEEEEV
B*44:03 14 HQDPIPKQPSSQPRGD D HQDPIPKQP Cw*04:01 0.60 HQDPIPKQP Cw*04:01 7.89  
B*58:02        LEAQEEEEV Cw*06:02 8.72  
Cw*04:01           
Cw*06:02           
E95 A*23:01 15 VAVHVASGYIEAEVIPA A1 VAVHVASGY Cw*16:01 1.50 VAVHVASGY A*23:01 30.27  
A*74:01 17 KRWIILGLNKIVRMYSPV A1 WIILGLNKI A*23:01 0.60 WIILGLNKI A*23:01 6.99  
B*44:03 16 KRWIILGLNKIVRMYSPV A1 IILGLNKIV A*74:01 0.60 IILGLNKIV B*44:03 28.76  
B*15:10 17 NMMLNIVGGHQAAMQMLK A1 HQAAMQMLK B*15:10 0.17     HQAAMQMLK
Cw*04:01   NMMLNIVGGHQAAMQMLK A1 HQAAMQMLK A*74:01 0.90     
Cw*16:01   NMMLNIVGGHQAAMQMLK A1 HQAAMQMLK Cw*04:01 1.30 HQAAMQMLK Cw*04:01 26.63  
  18 KNWMTETLLVQNANPDCK A1 TETLLVQNA B*44:15 0.09 TETLLVQNA B*44:03 5.85  
   KNWMTETLLVQNANPDCK A1 KNWMTETLL A*23:01 0.80 KNWMTETLL A*23:01 25.75  
  19 FRDYVDRFFKTLRAEQA A1 FRDYVDRFF Cw*04:01 0.03 FRDYVDRFF Cw*04:01 4.56  
   FRDYVDRFFKTLRAEQA A1 FRDYVDRFF A*23:01 0.60 FRDYVDRFF A*23:01 4.56  
   FRDYVDRFFKTLRAEQA A1 FRDYVDRFF Cw*04:01 1.10 FRDYVDRFF Cw*04:01 0.68  
  20 GATLEEMMTACQGVGGPGH A1 EEMMTACQG B*44:03 0.25 EEMMTACQG B*44:03 0.97  
  21 LRALGPGATLEEMMTA A1 RALGPGATL B*15:10 1.80 RALGPGATL B*44:01 0.56  
   LRALGPGATLEEMMTA A1 RALGPGATL Cw*04:01 0.60 RALGPGATL Cw*04:01 0.56  
  22 FFKTLRAEQATQEVKNWM A1 AEQATQEVK B*44:03 0.15 AEQATQEVK B*44:03 8.59  
  23 MEKEGKISKIGPENPY A1 SKIGPENPY B*15:03 0.50 SKIGPENPY A*23:01 35.68  
   MEKEGKISKIGPENPY A1 SKIGPENPY B*15:10 0.50 SKIGPENPY B*44:03 9.49  
  25 WVKVIEEKAFSPEVIPMF A1 AFSPEVIPMF A*23:01 0.40 AFSPEVIPM A*23:01 5.95  
   WVKVIEEKAFSPEVIPMF A1 WVKVIEEKA A*23:01 1.70 WVKVIEEKA A*23:01 17.53  
   WVKVIEEKAFSPEVIPMF A1 EEKAFSPEV B*44:03 0.80 EEKAFSPEV B*44:03 3.38  
   WVKVIEEKAFSPEVIPMF A1 EEKAFSPEV B*44:15 0.03     EEKAFSPEV
   WVKVIEEKAFSPEVIPMF A1 FSPEVIPMF Cw*04:01 0.50 FSPEVIPMF Cw*04:01 1.63 FSPEVIPMF
   WVKVIEEKAFSPEVIPMF A1 FSPEVIPMF Cw*16:01 0.50 FSPEVIPMF A*23:01 0.46  
   WVKVIEEKAFSPEVIPMF A1 KAFSPEVIP Cw*16:01 1.20 KAFSPEVIP B*4403 35.68  
  25 HQMKDCTERQANFLGKIW A1 RQANFLGKI B*4403 1.00 RQANFLGKI B*4403 11.67  
  26 PMFSALSEGATPQDLNMM A1 SEGATPQDL B*44:03 0.80 SEGATPQDL B*4403 0.33  
  27 HLARNCRAPRKKGCWK A1 HLARNCRAP A*74:01 0.60 HLARNCRAP A*23:01 35.46  
   LVQNANPDCKSILRAL A1        
  28 VATLYCVHQRIDVKDTK A1 ATLYCVHQR A*74:01 0.90 ATLYCVHQR A*23:01 21.03  
  29 KIEEIQNKSKQKTQQAAA A1 EIQNKSKQK A*74:01 1.03 EIQNKSKQK C*04:01 10.98  
  30 AGPIPPGQMREPRGSDIA A1 AGPIPPGQM B*15:10 0.60 AGPIPPGQM C*04:01 2.02  
   SKQKTQQAAADTGNSSKV A1        
E913 A*02:01 31 LWQRPLVTIKIGGQLKEA D LWQRPLVTI A*02:01 1.60 LWQRPLVTI A*02:01 11.25  
A*34:02   LWQRPLVTIKIGGQLKEA D QRPLVTIKI Cw*06:02 0.70 QRPLVTIKI Cw*06:02 16.29  
B*45:01   LWQRPLVTIKIGGQLKEA D WQRPLVTIK B*47:01 1.90 WQRPLVTIK B*45:01 19.93  
B*47:01 32 TVPVKLKPGMDGPKVKQW A1 LKPGMDGPK A*34:02 0.90 LKPGMDGPK Cw*06:02 26.76  
Cw*06:02           
Cw*16:01           
E914 A*01:01 33 DKWASLWNWFSITQWLWY D FSITQWLWY A*01:01 0.06 FSITQWLWY B*07:02 24.05 FSITQWLWY
A*02:01   DKWASLWNWFSITQWLWY D KWASLWNWF Cw*04:07 1.20     
B*07:02   DKWASLWNWFSITQWLWY D SLWNWFSIT A*02:01 1.66     
B*44:15 34 PVDPDEVEKATEGENNSL A1 ATEGENNSL A*01:01 1.74     
Cw*04:07           
Cw*07:02           
L91 A*02:01 35 EQMHTDIISLWDQSLK A1 IISLWDQSLK A*03:01 1.90 IISLWDQSL A*03:01 20.55 ISLWDQSLK
A*03:01   EQMHTDIISLWDQSLK A1 MHTDIISLW B*58:02 0.90 MHTDIISLW A*03:01 23.95  
B*53:01   EQMHTDIISLWDQSLK A1 MHTDIISLW Cw*06:02 1.30 MHTDIISLW Cw*06:02 3.72  
B*58:02   EQMHTDIISLWDQSLK A1 QMHTDIISL A*02:01 1.90     
Cw*04:01   EQMHTDIISLWDQSLK A1 QMHTDIISL B*5301 1.20 QMHTDIISL B*5301 18.52  
Cw*06:02 36 LETSEGCKQIIGQLQPAI D ILAQLQPAI A*02:01 0.40     
  37 SGGKLDAWEKIRLRPGGK A1 KIRLRPGGK A*03:01 0.25 KIRLRPGGK A*03:01 0.06 KIRLRPGGK
  38 LETTEGCQQIMEQLQPAL A1 IMEQLQPAL A*03:01 0.40 IMEQLQPAL A*03:01 21.06  
   LETTEGCQQIMEQLQPAL A1 IMEQLQPAL Cw*04:01 0.80 IMEQLQPAL Cw*04:01 0.19  
   LETTEGCQQIMEQLQPAL A1 QIMEQLQPA A*02:01 0.70     
  39 ERILSTCLGRSAEPVPL A1 RSAEPVPL B*58:02 0.12     
   ERILSTCLGRSAEPVPL A1 RILSTCLGR A*03:01 0.90 RILSTCLGR A*03:01 0.11  
   ERILSTCLGRSAEPVPL A1 CLGRSAEPV A*02:01 2.00     
  40 LVGPTPVNIIGRNMLTQI A1 LVGPTPVNI A*02:01 1.61 LVGPTPVNI :01 4.69  
  41 CKQIIGQLQPAIQTGSEEL D QIIGQLQPA A*02:01 1.80     
   CKQIIGQLQPAIQTGSEEL D AIQTGSEEL A*03:01 1.50 AIQTGSEEL A*03:01 21.04  
   CKQIIGQLQPAIQTGSEEL D IIGQLQPAI A*03:01 1.10     
  42 PAIQTGSEELRSLYNTVA D AIQTGSEEL A*03:01 1.50 AIQTGSEEL Cw*06:02 3.74  
   PAIQTGSEELRSLYNTVA D LRSLYNTVA Cw*06:02 0.70 LRSLYNTVA Cw*06:02 5.48  
L92 A*02:01 43 NDIQKLVGKLNWASQIYP D KLNWASQIY A*30:02 0.50 KLNWASQIY A*30:02 5.48 KLNWASQIY
A*30:02   NDIQKLVGKLNWASQIYP D KLVGKLNWA A*02:01 0.60 KLVGKLNWA A*02:01 1.22  
B*44:03   NDIQKLVGKLNWASQIYP D KLNWASQIY A*02:01 0.90 KLNWASQIY A*02:01 11.10  
B*14:02   NDIQKLVGKLNWASQIYP D KLNWASQIY Cw*04:01 1.80 KLNWASQIY Cw*04:01 13.24  
Cw*04:01 44 LVVKTYWGLHTGEREWHL D LVVKTYWGL A*02:01 1.70 LVVKTYWGL A*02:01 0.95  
Cw*08:02   LVVKTYWGLHTGEREWHL D VVKTYWGLH A*30:02 1.50     
  45 SLVNRVRQGYSPLSFQTL D NRVRQGYSPL B*14:02 0.12     
   SLVNRVRQGYSPLSFQTL D YSPLSFQTL Cw*04:01 0.70 YSPLSFQTL Cw*04:01 2.47  
   SLVNRVRQGYSPLSFQTL D RQGYSPLSF A*30:02 1.20 RQGYSPLSF A*30:02 4.51 RQGYSPLSF
   SLVNRVRQGYSPLSFQTL D RQGYSPLSF Cw*04:01 1.40 RQGYSPLSF Cw*04:01 3.12  
  46 TLPCRIKQIINMWQGV D CRIKQIINM A*02:02 0.40 CRIKQIINM A*30:02 28.36 CRIKQIINM
  47 MRVRGIQRNYQHLWRW D RNYQHLWRW B*44:03 0.40 RNYQHLWRW B*44:03 3.17  
  48 GEMKNCSFNITTEIRDKK D EMKNCSFNI B*44:03 0.30 EMKNCSFNI B*44:03 32.11  
  49 NVTENFNMWKNNMVEQMH D NFNMWKNNM Cw*04:01 1.06 NFNMWKNNM Cw*04:02 4.53  
   NVTENFNMWKNNMVEQMH D TENFNMWKNNM B*44:03 1.81 TENFNMWKN B*44:03 7.71  
  50 WLIDRIRERAEDSGNESE D WLIDRIRER A*02:01 2.00 WLIDRIRER A*02:01 4.68  
L94 A*3402 51 LIHLHYFDCFSDSAIRKA A1 YFDCFSDSA Cw*04:01 0.90 YFDCFSDSA Cw*04:01 2.52  
A*7401   LIHLHYFDCFSDSAIRKA A1 YFDCFSDSA Cw*06:02 1.60 YFDCFSDSA Cw*06:02 14.91  
B*4403   LIHLHYFDCFSDSAIRKA A1 HLHYFDCFSDSAIR A*7401 1.40     
B*5802   LIHLHYFDCFSDSAIRKA A1 FSDSAIRKA Cw*04:01 1.10 FSDSAIRKA Cw*04:01 0.78  
Cw*0401 52 HLARNCRAPRKKGCWK A1 ARNCRAPRK A*3402 1.10     
Cw*0602   HLARNCRAPRKKGCWK A1 HLARNCRAP A*3402 1.50     
   HLARNCRAPRKKGCWK A1 HLARNCRAP A*74:01 0.60     
  53 SKQKTQQAAADTGNSSKV A1 AADTGNSSK A*3402 1.15     
  54 HQDPIPKQPSSQPRGD D HQDPIPKQP Cw*04:01 0.60 HQDPIPKQP Cw*04:01 7.89  
L95 A*23:01 55 KRWIILGLNKIVRMYSPV A1 WIILGLNKI A*23:01 0.60 WIILGLNKI A*23:01 6.99  
A*74:01   KRWIILGLNKIVRMYSPV A1 IILGLNKIV A*74:01 0.60 IILGLNKIV Cw*04:01 2.81  
B*44:03 56 NMMLNIVGGHQAAMQMLK A1 GHQAAMQML B*15:10 0.40     
B*15:10   NMMLNIVGGHQAAMQMLK A1 HQAAMQMLK A*74:01 0.90     HQAAMQMLK
Cw*04:01   NMMLNIVGGHQAAMQMLK A1 HQAAMQMLK Cw*04:01 1.30 HQAAMQMLK Cw*04:01 26.63  
Cw*16:01 57 EVNIVTDSQYALGIIQA A1 EVNIVTDSQ B*44:03 0.50 EVNIVTDSQ B*44:03 19.78  
  58 AYETEMHNVWATHACV A1 TEMHNVWAT B*44:03 0.40 TEMHNVWAT B*44:03 0.88 YETEMHNVW
   AYETEMHNVWATHACV A1 MHNVWATHA B*15:10 0.90 MHNVWATHA Cw*04:01 11.32  
   AYETEMHNVWATHACV A1 MHNVWATHA B*44:03 0.90 MHNVWATHA B*44:04 22.06  
  59 AAEWDRLHPVHAGPI A1 AAEWDRLHP B*44:03 0.50 AAEWDRLHP B*44:03 34.74 AEWDRLHPV
   AAEWDRLHPVHAGPI A1 LHPVHAGPI B*15:10 0.15 AAEWDRLHP A*23:01 34.79  
   AAEWDRLHPVHAGPI A1 RLHPVHAGP A*74:01 1.50 AAEWDRLHP Cw*04:01 6.59  
  60 LRALGPGATLEEMMTA A1 RALGPGATL B*15:10 0.60 RALGPGATL A*23:01 8.98  
   LRALGPGATLEEMMTA A1 RALGPGATL Cw*04:01 0.60 RALGPGATL Cw*04:01 0.56  
  61 FFKTLRAEQATQEVKNWM A1 AEQATQEVK B*44:03 0.15 AEQATQEVK B*44:03 8.59  
  62 GTTSTPQEQIGWMTGNPPI A1 QEQIGWMTG B*44:15 0.65 QEQIGWMTG B*44:03 1.85  
   GTTSTPQEQIGWMTGNPPI A1 GWMTGNPPI A*23:01 1.40 GWMTGNPPI A*23:01 0.75  
  63 WVKVIEEKAFSPEVIPMF A1 EEKAFSPEV B*44:15 0.62     
   WVKVIEEKAFSPEVIPMF A1 EEKAFSPEV B*44:03 0.80 EEKAFSPEV B*44:03 3.38 EEKAFSPEV
   WVKVIEEKAFSPEVIPMF A1 WVKVIEEKA A*23:01 1.70 WVKVIEEKA A*23:01 34.76  
   WVKVIEEKAFSPEVIPMF A1 FSPEVIPMF Cw*04:01 0.50 FSPEVIPMF Cw*04:01 1.63  
   WVKVIEEKAFSPEVIPMF A1 AFSPEVIPM Cw*16:01 0.70 AFSPEVIPM Cw*04:01 0.28  
   WVKVIEEKAFSPEVIPMF A1 KAFSPEVIP Cw*16:01 1.20 KAFSPEVIP Cw*04:01 7.47  
  64 TVYYGVPVWKDAETTLF A1 TVYYGVPVW A*74:01 0.17 TVYYGVPVW B*44:03 7.96 VYYGVPVWK
   TVYYGVPVWKDAETTLF A1 TVYYGVPVW Cw*16:01 1.10 TVYYGVPVW Cw*04:01 1.25  
   TVYYGVPVWKDAETTLF A1 WKDAETTLF B*15:10 0.90     
   TVYYGVPVWKDAETTLF A1 VWKDAETTL A*23:01 0.60 WKDAETTLF A*23:01 4.36  
   TVYYGVPVWKDAETTLF A1 VWKDAETTL Cw*04:01 0.60 VWKDAETTL Cw*04:01 1.97  
  65 LRWGTMILGMIIICSAA A1 RWGTMILGM A*23:01 0.90 RWGTMILGM A*23:01 3.97  
   LRWGTMILGMIIICSAA A1 RWGTMILGM Cw*04:01 0.94 RWGTMILGM Cw*04:01 1.34  
  66 GHQAAMQMLKDTINEEAA A1 HQAAMQMLK A*74:01 0.90 HQAAMQMLK A*23:01 32.48  
  67 IKQGPKEPFRDYVDRFFK A1 FRDYVDRFF A*23:01 0.60 FRDYVDRFF A*23:01 10.14  
   IKQGPKEPFRDYVDRFFK A1 FRDYVDRFF Cw*04:01 0.60 FRDYVDRFF Cw*04:01 0.68  
  68 FRDYVDRFFKTLRAEQA A1 FRDYVDRFF A*23:01 0.60 FRDYVDRFF A*23:01 10.14  
   LVQNANPDCKSILRAL A1        
  69 MREPRGSDIAGTTSTPQEQI A1 MREPRGSDI B*15:10 2.00 MREPRGSDI Cw*04:01 1.95  
  70 EKIRLRPGGKKKYRLKHL A1 RLRPGGKKK A*74:01 0.28 RLRPGGKKK A*23:01 28.99  
  71 VATLYCVHQRIDVKDTK A1 ATLYCVHQR A*74:01 0.90 ATLYCVHQR B*44:03 28.12  
  72 LFCASDAKAYETEMHNVW A1 SDAKAYETEMHNVW B*44:03 0.31 KAYETEMHN B*44:03 35.92  
L913 A*02:01 73 PPLVKLWYQLEKEPIIGA D LVKLWYQLE A*34:01 0.50 LVKLWYQLE A*02:01 18.93  
A*34:02   PPLVKLWYQLEKEPIIGA D KLWYQLEKEPIIGA A*02:01 1.47 WYQLEKEPI A*02:01 18.24  
B*45:01   PPLVKLWYQLEKEPIIGA D QLEKEPIIG B*45:01 0.90 QLEKEPIIG B*45:01 17.25  
B*47:01   PPLVKLWYQLEKEPIIGA D YQLEKEPII A*02:01 0.80 YQLEKEPII A*02:01 0.25  
Cw*06:02   PPLVKLWYQLEKEPIIGA D YQLEKEPII B*47:01 1.20 YQLEKEPII Cw*06:02 2.05  
Cw*16:01 74 KWKPKMIGGIGGFIKVR D MIGGIGGFIK A*34:02 0.20     
   KWKPKMIGGIGGFIKVR D KMIGGIGGF A*02:01 1.00 KMIGGIGGF A*02:01 1.55  
   KWKPKMIGGIGGFIKVR D KMIGGIGGF B*47:01 1.10 KMIGGIGGF Cw*06:02 5.37  
  75 VIWGKTPKFRLPIQKETW D IVIWGKTPK A*34:02 0.15     
   VIWGKTPKFRLPIQKETW D KTPKFRLPI Cw*16:01 1.10 KTPKFRLPI A*02:01 4.43  
   VIWGKTPKFRLPIQKETW D VIWGKTPKF A*34:02 1.00 VIWGKTPKF Cw*06:02 7.82  
  76 RQANFLGKIWPSHKGR D RQANFLGKI B*47:01 0.40     
   RQANFLGKIWPSHKGR D RQANFLGKI Cw*06:02 2.00 RQANFLGKI Cw*06:02 9.23  
   RQANFLGKIWPSHKGR D FLGKIWPSH A*34:02 1.10 RQANFLGKI B*45:01 7.03  
  77 KIEELREHLLRWGFTTPDK D REHLLRWGF B*47:01 0.03 REHLLRWGF A*02:01 20.74  
   KIEELREHLLRWGFTTPDK D REHLLRWGF B*45:01 0.70 REHLLRWGF B*45:01 1.11  
   KIEELREHLLRWGFTTPDK D LREHLLRWG Cw*06:02 1.40 LREHLLRWG Cw*06:02 19.44  
   KIEELREHLLRWGFTTPDK D HLLRWGFTT A*02:01 1.20 HLLRWGFTT A*02:01 0.20  
  78 GFAILKCKDKEFNGTGPCK A1 KEFNGTGPC B*45:01 1.50 KEFNGTGPC B*45:01 1.25  
  79 AILNIPTRIRQGLERALL D IRQGLERAL Cw*06:02 0.60 IRQGLERAL Cw*06:02 0.71  
   AILNIPTRIRQGLERALL D AILNIPTRI A*02:01 0.60     
   AILNIPTRIRQGLERALL D RQGLERALL B*47:01 1.70 RQGLERALL B*45:01 13.50  
  80 QKTELQAINLALQDSGLEV D LALQDSGLE A*02:01 1.50 LALQDSGLE A*02:01 22.65  
   QKTELQAINLALQDSGLEV D TELQAINLA B*47:01 0.60 TELQAINLA B*45:01 0.15  
   QKTELQAINLALQDSGLEV D QKTELQAIN B*45:01 1.00 QKTELQAIN B*45:01 12.04  
   QKTELQAINLALQDSGLEV D NLALQDSGL A*34:02 1.50 NLALQDSGL A*02:01 4.72  
  81 IIGRNLLTQIGCTLNFPI D IGCTLNFPI A*02:01 0.90 IGCTLNFPI A*02:01 4.79  
   IIGRNLLTQIGCTLNFPI D NLLTQIGCTLNFPI A*02:01 1.63     
   IIGRNLLTQIGCTLNFPI D LLTQIGCTL A*02:01 1.90 LLTQIGCTL A*02:01 0.53  
   IIGRNLLTQIGCTLNFPI D TQIGCTLNF Cw*16:01 1.40 TQIGCTLNF Cw*06:02 2.26  
   IIGRNLLTQIGCTLNFPI D LLTQIGCTL Cw*16:01 0.90     
  82 KWKPKMIGGIGGFIKVR D KMIGGIGGF A*02:01 1.00 KMIGGIGGF A*02:01 1.55  
  83 LWQRPLVTIKIGGQLKEA D LWQRPLVTI A*02:01 1.60 LWQRPLVTI A*02:01 11.25  
   LWQRPLVTIKIGGQLKEA D QRPLVTIKI Cw*06:02 0.70 LWQRPLVTI Cw*06:02 0.74  
  84 LKEALLDTGADDTVLEEI D LKEALLDTG B*45:01 1.20 LKEALLDTG B*45:01 12.15  
  85 KRQEILDLWVYHTQGYF A1 QEILDLWVY B*45:01 1.70 QEILDLWVY B*45:01 1.02  
   KRQEILDLWVYHTQGYF A1 QEILDLWVY B*47:01 0.90     
   KRQEILDLWVYHTQGYF A1 RQEILDLWV Cw*06:02 1.10 RQEILDLWV Cw*06:02 21.81  
   KRQEILDLWVYHTQGYF A1 ILDLWVYHT A*02:01 0.70 ILDLWVYHT B*45:01 13.80  
   IYSLIEESQNQQEKNEQEL D        
L914 A*01:01 86 SFNCGGEFFYCNTSGLF A1 SFNCGGEFFY A*01:01 0.25     
A*02:01   SFNCGGEFFYCNTSGLF A1 SFNCGGEFF Cw*04:07 1.30 SFNCGGEFF B*44:03 7.72  
B*07:02   SFNCGGEFFYCNTSGLF A1 SFNCGGEFF Cw*07:02 1.10 SFNCGGEFF B*07:02 22.45  
B*44:03   SFNCGGEFFYCNTSGLF A1 GEFFYCNTS B*44:03 1.30 GEFFYCNTS B*44:03 1.80  
Cw*04:07 87 MEKEGKISKIGPENPY A1 KEGKISKIGPENPY B*44:03 1.30 KISKIGPEN B*44:03 39.08  
Cw*07:02   MEKEGKISKIGPENPY A1 ISKIGPENP A*01:01 1.80 ISKIGPENP B*07:02 27.27  
  88 ARKNRRRRWRARQRQI A1 RRWRARQRQ Cw*07:02 0.60 RRWRARQRQ Cw*07:02 19.17  
  1. Experimentally mapped peptides for all participants and their cognate computational core 9-mer and a single 14-mer epitope sequence with scores. Peptides shown in italic text were not algorithmically predicted as binders. Multiple computational predictions contained in a single experimental peptide were counted as a single hit. Participant’s identifiers (ID) beginning with E or L represent early or late time sampling points respectively
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BMC Infectious Diseases

ISSN: 1471-2334

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