Table 1 Molecular characterization of GBS (n-16) isolated at the University of Gondar Comprehensive Specialized Hospital, Northwest Ethiopia
Isolate ID | Serotypes | Sequence type | Clonal complex | Year of Isolation | Size (bp) | contigs | N50 | Drug resistant genes | Surface protein genes | Allelic profiles | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALPH | SRR | Pili | adhP | pheS | atr | glnA | sdhA | glcK | tkt | |||||||||
1451–19 | V | 2 | 19 | 2017 | NA | NA | NA | TETM | ALP1 | SRR1 | PI1:PI2A1 | 1 | 1 | 3 | 1 | 1 | 2 | 2 |
1451–20 | V | 2 | 19 | 2017 | 2,123,519 | 36 | 154,151 | TETM | ALP1 | SRR1 | PI1:PI2A1 | 1 | 1 | 3 | 1 | 1 | 2 | 2 |
1451–21 | V | 2 | 19 | 2017 | 2,126,782 | 29 | 136,443 | TETM | ALP1 | SRR1 | PI1:PI2A1 | 1 | 1 | 3 | 1 | 1 | 2 | 2 |
1451–22 | II | K810 | 10 | 2017 | 2,049,638 | 60 | 85,692 | TETL:TETM | ALPHA | SRR1 | PI1:PI2A1 | 9 | 1 | 4 | 1 | 3 | 3 | 2 |
1451–23 | II | 10 | 10 | 2017 | 2,031,351 | 71 | 74,284 | TETL:TETM | Neg | SRR1 | PI1:PI2A1 | 9 | 1 | 4 | 1 | 3 | 3 | 2 |
1451–24 | II | 10 | 10 | 2017 | 2,065,816 | 100 | 65,164 | TETL:TETM | Neg | SRR1 | PI1:PI2A1 | 9 | 1 | 4 | 1 | 3 | 3 | 2 |
1451–25 | II | 10 | 10 | 2017 | 2,033,318 | 78 | 82,248 | TETL:TETM | neg | SRR1 | PI1:PI2A1 | 9 | 1 | 4 | 1 | 3 | 3 | 2 |
1451–26 | II | 10 | 10 | 2017 | 3,891,488 | 1797 | 6059 | TETL:TETM | neg | SRR1 | PI1:PI2A1 | 9 | 1 | 4 | 1 | 3 | 3 | 2 |
1451–27 | II | 10 | 10 | 2017 | 2,043,421 | 58 | 85,697 | TETL:TETM | ALPHA | SRR1 | PI1:PI2A1 | 9 | 1 | 4 | 1 | 3 | 3 | 2 |
1451–28 | VI | 14 | 1 | 2017 | 2,116,176 | 29 | 137,184 | TETM | ALP1 | SRR1 | PI1:PI2B | 1 | 1 | 2 | 1 | 5 | 2 | 2 |
1451–29 | II | 569 | 10 | 2017 | 2,022,186 | 40 | 150,703 | TETM | ALPHA | SRR1 | PI1:PI2A1 | 9 | 1 | 1 | 1 | 3 | 1 | 2 |
1451–30 | II | 569 | 10 | 2017 | 2,018,612 | 36 | 111,901 | TETM | ALPHA | SRR1 | PI1:PI2A1 | 9 | 1 | 1 | 1 | 3 | 1 | 2 |
1451–31 | II | 569 | 10 | 2017 | 2,086,254 | 279 | 108,514 | TETM | ALPHA | SRR1 | PI1:PI2A1 | 9 | 1 | 1 | 1 | 3 | 1 | 2 |
1451–32 | II | 569 | 10 | 2017 | 2,018,343 | 40 | 138,563 | TETM | ALPHA | SRR1 | PI1:PI2A1 | 9 | 1 | 1 | 1 | 3 | 1 | 2 |
1451–33 | II | 569 | 10 | 2017 | 2,023,055 | 36 | 150,759 | TETM | ALPHA | SRR1 | PI1:PI2A1 | 9 | 1 | 1 | 1 | 3 | 1 | 2 |
1451–34 | Ia | 933 | 23 | 2017 | 2,082,078 | 97 | 166,116 | neg | ALP23 | SRR1 | PI1:PI2A3 | 5 | 4 | 6 | 1 | 2 | 1 | 81 |