Table 1 Pathogenic microorganisms detected by using next-generation sequencing in original and follow-up urine specimen
Original urine specimen | Follow-up urine specimen | ||||
|---|---|---|---|---|---|
Species | Category | Number of detected reads | Species | Category | Number of detected reads |
Homo sapiens | Human | 26,263,435 | Homo sapiens | Human | 15,341,902 |
Enterococcus faecalis | Bacteria | 163 | Enterococcus faecalis | Bacteria | 2 |
JC polyomavirus | Virus | 91 | JC polyomavirus | Virus | 202 |
Human herpesvirus 6 | Virus | 3 | Human herpesvirus 6 | Virus | 1 |
Malassezia globosa | fungus | 77 | Streptococcus pneumoniae | Bacteria | 129 |
Actinomyces neuii | Bacteria | 32 | Streptococcus mitis | Bacteria | 59 |
Staphylococcus haemolyticus | Bacteria | 8 | Ureaplasma parvum | Bacteria | 56 |
Cutibacterium avidum | Bacteria | 6 | Streptococcus pseudopneumoniae | Bacteria | 51 |
Other species: Meiothermus ruber, Comamonas testosteroni, Yarrowia lipolytica, Acinetobacter ursingii, etc. | Streptococcus oralis | Bacteria | 26 | ||
Staphylococcus lugdunensis | Bacteria | 3 | |||
Other species: Xanthomonas campestris, Cutibacterium acnes, Delftia acidovorans, Acinetobacter ursingii, Meiothermus ruber, etc. | |||||