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Table 1 Interference criteria interpretation grid for co-infection interference studies

From: Four-color multiplex real-time PCR assay prototype targeting azithromycin resistance mutations in Mycoplasma genitalium

Reference condition

Test condition

 

Conclusion

% of positive calls

% of positive calls

ΔCt

 

<  85%

Any %

Any ΔCt

The experiment is invalid. The causes of the shift in sensitivity must be investigated and the experiment reconducted.

≥ 85%

<  85%

Any ΔCt

The highly-concentrated DNA or the tested substance is considered to be interfering with the detection of the target pathogen if any of these 2 criteria are met.

 

Any %

ΔCt ≥ 2SDrep

≥ 85%

≥ 85%

Any ΔCt

The highly-concentrated DNA or the tested substance is considered not to be interfering with the detection of the target pathogen if both criteria are met.

 

Any %

ΔCt < 2SDrep

  1. % of positive calls: % of wells with target detection; ΔCt: Ct difference between reference condition and test condition; 2SDrep: 2× the standard deviation calculated during the limit of detection study for the target concentration closest to the concentration used here