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Table 5 Concordance for HCV genotype and subtype determination with the different genotyping assays – NS5B sequencing as reference

From: Comparison of Sanger sequencing for hepatitis C virus genotyping with a commercial line probe assay in a tertiary hospital

NS5B Concordance percentage: NS5B sequencing vs
5’UTR sequencing (n) Core sequencing (n) VERSANT LiPA assay (n)
G1 85,7% (6/7) 89% (8/9) 75% (12/16)
G1a 0% (0/1) 100% (1/1) 100% (3/3)
G1b 50% (3/6) 86% (6/7) 82% (9/11)
G2 100% (6/6) 100% (5/5) 100% (6/6)
G3 100% (3/3) 100% (3/3) 100% (7/7)
G4 100% (6/6) 100% (5/5) 100% (8/8)
G6 0% (0/2) 60% (3/5) 60% (3/5)
G2k/1b 0% (0/1) 0% (0/1)
  1. G Genotype