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Table 4 Genotype with the four assays for samples discordant between the assays

From: Comparison of Sanger sequencing for hepatitis C virus genotyping with a commercial line probe assay in a tertiary hospital

Sample number

Genotype

VERSANT LiPA assay

5’UTR sequencing

CORE sequencing

NS5B sequencing

HCV001

1a

1a/b

1a

1a

HCV003

1a

1a/b

1a

NR

HCV004

1a

1b

6

NR

HCV010

1b

1a/b

1b

1b

HCV011

1b

1a/b

1b

1b

HCV013

1b

NI

1b

6

HCV020

1b

1

1b

NR

HCV037

3a

3

3/2

NR

HCV046

4

4/3

4

NR

HCV060

6

1b

6

NR

HCV062

6a/6b

1b/6

6

NR

HCV066

1b*

NI

1b

1

HCV067

1b*

1b

1b

1b

HCV068

1b*

1b

1b

1b

HCV069

1b*

1b

1b

NR

HCV070

1b*

1b

6

6

HCV071

1b*

1b

1b

NI

HCV072

1b*

6

6

PA

HCV073

1a ou 6

NR

NR

1

HCV075

ID

1/3/6

6

1b

HCV076

ID

1b

1b

6

HCV001

1a

1a/b

1a

1a

HCV003

1a

1a/b

1a

NR

HCV004

1a

1b

6

NR

HCV010

1b

1a/b

1b

1b

HCV011

1b

1a/b

1b

1b

HCV013

1b

NI

1b

6

  1. NI sequence not interpretable, NR not realised (short sample), UND Genotype undetermined by the VERSANT LiPA assay
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BMC Infectious Diseases

ISSN: 1471-2334

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