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Table 4 Genotype with the four assays for samples discordant between the assays

From: Comparison of Sanger sequencing for hepatitis C virus genotyping with a commercial line probe assay in a tertiary hospital

Sample number Genotype
VERSANT LiPA assay 5’UTR sequencing CORE sequencing NS5B sequencing
HCV001 1a 1a/b 1a 1a
HCV003 1a 1a/b 1a NR
HCV004 1a 1b 6 NR
HCV010 1b 1a/b 1b 1b
HCV011 1b 1a/b 1b 1b
HCV013 1b NI 1b 6
HCV020 1b 1 1b NR
HCV037 3a 3 3/2 NR
HCV046 4 4/3 4 NR
HCV060 6 1b 6 NR
HCV062 6a/6b 1b/6 6 NR
HCV066 1b* NI 1b 1
HCV067 1b* 1b 1b 1b
HCV068 1b* 1b 1b 1b
HCV069 1b* 1b 1b NR
HCV070 1b* 1b 6 6
HCV071 1b* 1b 1b NI
HCV072 1b* 6 6 PA
HCV073 1a ou 6 NR NR 1
HCV075 ID 1/3/6 6 1b
HCV076 ID 1b 1b 6
HCV001 1a 1a/b 1a 1a
HCV003 1a 1a/b 1a NR
HCV004 1a 1b 6 NR
HCV010 1b 1a/b 1b 1b
HCV011 1b 1a/b 1b 1b
HCV013 1b NI 1b 6
  1. NI sequence not interpretable, NR not realised (short sample), UND Genotype undetermined by the VERSANT LiPA assay