Skip to main content

Table 2 Concordance for HCV genotype and subtype determination with the different genotyping assays – VERSANT LiPA assay as reference

From: Comparison of Sanger sequencing for hepatitis C virus genotyping with a commercial line probe assay in a tertiary hospital

Genotype Concordance percentage: VERSANT LiPA assay vs
5’UTR sequencing (n) Core sequencing (n) NS5B sequencing (n)
G1 100% (15/15) 94% (15/16) 92% (12/13)
G1a 40% (2/5) 75% (3/4) 100% (3/3)
G1b 70% (7/10) 100% (12/12) 90% (9/10)
G2 100% (5/5) 100% (5/5) 100% (6/6)
G3 100% (7/7) 86% (6/7) 100% (7/7)
G4 91% (10/11) 100% (10/10) 100% (8/8)
G6 60% (3/5) 100% (8/8) 100% (3/3)
G1 or 6 100% (6/6) 100% (7/7) 100% (5/5)
  1. G Genotype