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Table 1 Distribution of ESBL factors, antibiotic resistance and VF genes in MDR UPEC

From: Phylogeny, sequence-typing and virulence profile of uropathogenic Escherichia coli (UPEC) strains from Pakistan

Numbers and percentagesof isolates and their respective traits (n = 155)
Resistance traits Total Isolates (n = 155)n (%) Group A
(n = 8)n(%)
Group B1
(n = 12) n(%)
Group B2
(n = 92) n(%)
Group D
(n = 43)n(%)
p value
ESBL phenotypes 65(42) 1(13) 3(25) 36(39) 25(58) 0.0268
blaCTX-M-15 57(37) 1(13) 3(25) 32(35) 21(49) 0.1333
blaTEM 23(15) 1(13) 3(25) 13(14) 6(14) 0.7823
blaSHV 6(4) 00 00 3(3) 3(7) 0.0907
blaOXA 10(6) 00 1(8) 4(4) 5(12) 0.3610
blaPSE 1(0.6) 00 00 1(1) 00 0.8783
Piperacillin tazobactam 7(5) 00 1(8) 4(4) 2(5) 0.8514
Ceftazidime 96(62) 3(38) 7(58) 54(59) 32(74) 0.1483
Cefotaxime 101(65) 3(38) 7(58) 59(64) 32(74) 0.2028
Ceftriaxone 99(64) 3(38) 8(67) 59(64) 29(67) 0.4001
Ciprofloxacin 95(61) 6(75) 7(58) 56(90) 26(60) 0.4001
Levofloxacin 97(63) 7(88) 8(67) 56(90) 26(60) 0.4929
Amikacin 7(5) 1(13) 00 5(5) 1(2) 0.4920
Gentamicin 47(30) 4(50) 6(50) 24(26) 13(30) 0.2171
Amoxicillin-clavulanic acid 111(72) 5(63) 7(58) 66(72) 26(60) 0.5224
Trimethoprim sulfonamides 130(84) 7(88) 11(92) 77(84) 35(81) 0.8461
Nitrofurantoin 9(6) 1(13) 1(8) 6(7) 1(2) 0.6075
Fosfomycin 15(10) 1(13) 2(17) 8(9) 4(9) 0.8370
fimH 155 (100) 8 (100) 12 (100) 92 (100) 43 (100) > 0.9999
papA 20 (13) 1 (13) 1 (8) 12 (13) 6 (14) 0.9659
papC 75 (48) 2 (25) 8 (67) 43 (47) 22 (51) 0.3092
papEF 37 (24) 0 6 (50) 19 (21) 12 (28) 0.0476
papGI 6 (4) 0 0 3 (3) 3 (7) 0.5699
papGII 70 (45) 2 (25) 7 (58) 37 (40) 24 (53) 0.1695
papGIII 6 (4) 0 0 4 (4) 2 (5) 0.8177
sfa/foc 20 (13) 2 (25) 1 (8) 13 (14) 4 (9) 0.5968
Afa 15 (10) 0 1 (8) 10 (11) 4 (9) 0.7919
bmaE 2 (1) 0 1 (8) 1 (1) 0 0.1466
fyuA 37 (24) 1 (13) 2 (17) 21 (23) 13 (30) 0.5882
iutA 86 (55) 5 (63) 5 (42) 52 (57) 24 (56) 0.7701
feoB 76 (49) 3 (38) 6 (50) 40 (43) 27 (63) 0.1852
kpsmtII 40 (26) 0 4 (33) 21 (23) 15 (35) 0.1438
kpsmtIII 4 (3) 0 1 (8) 3 (3) 0 0.3765
Usp 22 (14) 2 (25) 2 (17) 14 (15) 4 (9) 0.6256
hlyA 18 (12) 1 (13) 3 (25) 6 (7) 8 (19) 0.0908
cdtB 11 (7) 0 3 (25) 6 (7) 2 (5) 0.0758
  1. Distribution of resistance and virulence traits among different phylogroups of uropathogenic E. coli (N = 155). The p values were calculated by comparing different traits among phylogroups