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Table 2 Analysis of replacement (R) and silent (S) mutations in heavy and light chain variable regions of single plasmablast-derived mAbs

From: Human monoclonal antibodies isolated from a primary pneumococcal conjugate Vaccinee demonstrates the expansion of an antigen-driven Hypermutated memory B cell response

Antibody ID

Number of clones

VH

   

VL

   
  

Total NT substitution (%)

R/S ratio in Frame work

R/S ratio in CDR regions

Strong Selection On HCDR

Total NT substitution (%)

R/S ratio in Frame work

R/S ratio in CDR regions

Strong Selection on LCDR

1A2

1

6.08%

4/2

10/2

Yes

0.34%

0/0

1/0

No

1A4

1

6.08%

3 /4

11/0

Yes

2.05%

1/0

4/1

Yes

1A6

6

8.59%

7/2

15/1

Yes

3.97%

2/1

8/1

Yes

1A10

1

6.46%

5/5

7/2

Yes

2.72%

0/1

7/0

Yes

1B1

1

1.36%

2/1

1/0

No

1.04%

0/0

3/0

No

1B2

2

4.42%

2/2

8/1

Yes

2.82%

3/0

4/0

Yes

1C3

1

5.78%

4/2

11/0

Yes

2.03%

1/1

4/0

Yes

1C4

2

5.48%

2/1

12/1

Yes

2.38%

5/2

0/0

No

1C6

1

3.75%

1 /2

8/0

Yes

2.37%

0/1

5/1

Yes

1D4

1

6.16%

5/4

9/0

Yes

3.64%

0/3

8/0

Yes

1D7

1

7.43%

5/3

14/0

Yes

2.74%

0/1

6/1

Yes

  1. Note: Antigen-driven selection on HCDR and LCDR regions was judged based on somatic mutation analysis method developed by Shlomchik M et al. [27]