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Table 3 Nucleotide polymorphism and allelic diversity among the loci of MLST

From: Clonal diversity and genetic profiling of antibiotic resistance among multidrug/carbapenem-resistant Klebsiella pneumoniae isolates from a tertiary care hospital in Saudi Arabia

Locus Length (bp) No. alleles present No. Polymorphic sites (%) No. Synonymous mutations No. Non-synonymous mutations # SNPs Ts Tv Ks Ka Ka/Ks Diversity Index (π)
gapA 450 4 4 (0.89) 4 0 32 26 6 0.0060 NANa 0.00161126
InfB 318 5 4 (1.25) 4 0 69 69 0 0.0160 NAN 0.00393538
mdh 477 5 7 (1.47) 6 1 35 33 2 0.0050 0.0000 0.0000 0.0014328
pgi 432 3 2 (0.46) 2 0 9 0 9 0.0020 NAN 0.00055167
phoE 420 8 8 (1.90) 8 0 77 73 4 0.0230 NAN 0.00533477
rpoB 501 2 1 (0.20) 0 1 22 22 0 NAN 0.0010 0.00083368
tonB 414 10 13 (3.14) 7 6 192 103 89 0.0160 0.0060 0.3750 0.0089006
Concatenated 3012 0 39 (1.29) 31 8 436 326 110 0.0090 0.0010 0.1100 0.00304244
  1. aNot a number; SNP single nucleotide polymorphism, Ts Transitions, Tv Transversions, Ks Average number of nucleotide substitution per aynonymous site, Ka Average number of nucleotide substitution per non-synonymous site