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Table 1 Properties of the MLST loci in the clinical B. pseudomallei isolates from Peninsular Malaysia

From: Multilocus sequence types of clinical Burkholderia pseudomallei isolates from peninsular Malaysia and their associations with disease outcomes

Locus No. of nucleotides analyzed No. of alleles No. of SNP SNP Frequencya No. of variable sites Sequence diversity rateb
Ace 519 4 3 0.6% 3 4.1%
gltB 522 5 8 1.5% 3 3.1%
gmhD 468 5 12 2.5% 5 4.0%
lepA 486 6 21 4.3% 15 5.3%
lipA 402 5 7 1.7% 4 2.9%
narK 561 4 9 1.6% 5 3.3%
Ndh 443 3 2 0.5% 2 2.5%
  1. aRate of SNPs diversity in relation with locus length (no. of SNP/locus length)
  2. bRate of allele diversity in relation with the number of total referenced database alleles