Fig. 2

Core SNP tree, resistome, virulome and plasmid replicon analysis of 68 carbapenem-resistant K. pneumoniae strains. The maximum likelihood core SNP tree (left) was constructed by using K. pneumoniae 342 as reference genome. Major genetically distinct lineages are indicated by capital letters and branches labelled in different colours on the basis of the MLST type. The resistome, virulome and plasmid replicon analysis boxes (right) show the presence (grey) or absence (white) of the relevant genes for each of the isolates