Table 2 Percentage identity between ORFs of the Korean strain and human MERS-CoV representative strains at the amino acid level
Lineage | Strain | ORF1ab | S | ORF3 | ORF4a | ORF4b | ORF5 | E | M | N | ORF8b |
|---|---|---|---|---|---|---|---|---|---|---|---|
Outgroup | EMC/2012 | 99.6 | 99.9 | 96.1 | 99.1 | 99.6 | 100.0 | 100.0 | 99.1 | 99.8 | 99.1 |
Lineage 1 | England-Qatar/2012 | 99.8 | 99.8 | 98.1 | 100.0 | 100.0 | 100.0 | 100.0 | 99.1 | 99.3 | 100.0 |
MERS − CoV − Jeddah − human − 1 | 99.7 | 99.9 | 95.2 | 99.1 | 99.6 | 100.0 | 100.0 | 99.5 | 100.0 | 99.1 | |
Lineage 2 | Al-Hasa_1_2013 | 99.8 | 99.9 | 97.1 | 99.1 | 100.0 | 100.0 | 100.0 | 99.1 | 100.0 | 100.0 |
Abu-Dhabi_UAE_8_2014 | 99.7 | 99.8 | 98.1 | 99.1 | 100.0 | 98.7 | 100.0 | 99.1 | 99.8 | - | |
Lineage 3 | Riyadh_2014KSA_683/KSA/2014 | 99.6 | 99.9 | 98.1 | 100.0 | 99.2 | 100.0 | 100.0 | 99.5 | 99.5 | 100.0 |
Lineage 4 | Jeddah_C7770/KSA/2014–04-07 | 99.8 | 99.9 | 98.1 | 100.0 | 100.0 | 100.0 | 100.0 | 99.1 | 99.5 | 97.3 |
Lineage 5 | Riyadh_KKUH_0780_20150225 | 99.9 | 99.9 | 100.0 | 99.1 | 99.2 | 99.6 | 100.0 | 100.0 | 100.0 | 100.0 |