Table 4 Number of antibiotic resistance genes or open reading frames according to antibiotic classes as predicted using Comprehensive Antibiotic resistance Database (CARD; http://arpcard.mcmaster.ca)
E. coli isolate | Sequence type | Aminoglycoside | β-lactamase | Sulfonamide | Polymyxin | Peptide/Bacitracin | Lincosamide | Isoniazid/Miscellaneous | Mac/lin/phe/str/lina | Streptothricin | Antibiotic effluxb |
|---|---|---|---|---|---|---|---|---|---|---|---|
1047 | 2076 | 1 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 51 |
1009 | 73 | 0 | 2 | 0 | 8 | 1 | 1 | 1 | 1 | 0 | 51 |
904 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
910 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
913 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
923 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
926 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
929 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 51 |
934 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
937 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
939 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 53 |
943 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
947 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
949 | 95 | 2 | 3 | 1 | 7 | 1 | 1 | 1 | 1 | 0 | 52 |
780 | 127 | 1 | 3 | 0 | 7 | 1 | 2 | 1 | 1 | 1 | 52 |
1008 | 394 | 0 | 2 | 0 | 7 | 1 | 2 | 1 | 1 | 0 | 52 |