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Table 4 Spoligo patterns and family assignment of Extra-pulmonary tuberculosis isolates

From: Clinical, molecular and drug sensitivity pattern of mycobacterial isolates from extra-pulmonary tuberculosis cases in Addis Ababa, Ethiopia

No. Spoligotype octal/binary format Shared type number Lineage using conformal Bayesian network (rules model) sub lineage on SpolDB4 Spotclust ID based on SpolDB3 model Spotclust probability No.of isolates %
1 111111111113771 1 East Asian (Beijing) Beijing/W lineage Beijing family   1 1.69
2 111111117761771 4 East-Asian LAM3    1 1.69
3 700000007177771 910 Indo-Oceanic U Family 36   3 5.08
4 777000377760771 149 Euro-American T3    6 10.1
5 777777777760771 53 Euro-American T1    12 20.3
6 777777777720771 50 Euro-American H3    1 1.69
7 777777777760751 612 Euro-American T1    1 1.69
8 777775777760731 584 Euro-American T1    1 1.69
9 777737777760771 37 Euro-American T1    4 6.77
10 577777607760771 866 Euro-American LAM9    1 1.69
11 777777777420771 777 Euro-American H3    1 1.69
12 777777754020771 883 Euro-American H1    1 1.69
13 777777774020771 47 Euro-American H1    1 1.69
14 777737770000000 56 Euro-American U Family34/ EAI1/ 0.99 1 1.69
15 703777740003171 25 East-African Indian (CAS) CAS    5 8.47
16 703377400001771 21 East-African Indian (CAS) CAS    3 5.08
17 777777377760771 40 Euro-American T4    1 1.69
18 777737777420771 35 Euro-American H4    1 1.69
19 603777740003771 952 East-African Indian (CAS) CAS    1 1.69
20 577777002060771 788 Euro-American T1    1 1.69
21 007777707760771 1889 Euro-American U LAM9 0.688 1 1.69
22 776737777760771 New Euro-American   T1 0.99 2 3.39
23 777317347760671 New Euro-American   T1 0.99 1 1.69
24 777777747420771 New Euro-American   H3 0.77 1 1.69
25 377000377760771 New Euro-American   T3 0.99 1 1.69
26 777737747760760 New Euro-American   T1 0.99 1 1.69
27 703777600003171 New East-African Indian (CAS)   CAS 0.99 1 1.69
28 703701740003171 New East-African Indian (CAS)   EAI4 0.933 1 1.69
29 006737777760771 New Euro-American   T1 0.99 1 1.69
30 511000377760771 New Euro-American   T3 0.99 1 1.69
31 602343761000200 New M. bovis     1 1.69
        59 100 %
  1. CAS (Central Asian Strain), EAI (East African Indian), H (Haralem), LAM (Latin American), T (ill defined)