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Table 3 Times to the most recent common ancestor (tMRCAs) of 8 major clusters of Slovenian sequences obtained by employing Bayesian analysis on two different sets of sequences; set comprised of all Slovenian subtype B sequences and separate sets of only clustered sequences

From: Bridging epidemiology with population genetics in a low incidence MSM-driven HIV-1 subtype B epidemic in Central Europe

  Full analysis Analysis based on cluster strains   
  Mean Median 95% HPD Mean Median 95% HPD Sampling dates Time depths2
Cluster 1 1990.6 1991.4 1987.1–1996.1 1998.0 1998.3 1995.2–2000.4 2001.42–2012.73 22.13
Cluster 2 1986.9 1988.1 1983.1–1992.9 1990.0 1990.8 1980.1–1998.1 2003.06–2012.68 25.78
Cluster 3 1999.1 1999.9 1995.4–2002.9     2005.46–2012.74 13.64
Cluster 4 1991.4 1992.2 1987.0–1998.1     2002.40–2012.64 21.24
Cluster 5 1 1990.6 1991.1 1987.1 – 1995.6     2000.68–2009.47 18.87
Cluster 6 1986.1 1987.4 1981.4–1990.5     2000.25–2012.92 26.82
Cluster 7 2003.0 2003.6 2000.8–2005.3     2005.32–2012.45 9.45
Cluster 8 2001.2 2001.7 1999.0–2003.4     2004.01–2011.77 10.57
  1. Note: The analysis was performed in duplicate by using a relaxed clock model with uncorrelated lognormal distribution and Bayesian skyline coalescent model.
  2. 1numbers are shown for the newly defined Cluster 5 with only 10 patients.
  3. 2time depths are shown in years and calculated according to the mean years of MRCA obtained in the full analysis.
  4. HPD = highest posterior density.