Table 2 Bacterial species and strains used to test the specificity of the RiboSEQ real-time PCR test
GBS | Serotype | Collection ref no | Stool Panel | Collection ref no |
|---|---|---|---|---|
Streptococcus agalactiae | Ia | BCCM 15081 | Escherichia coli | DSM 30038 |
Streptococcus agalactiae | Ib | BCCM 15082 | Morganella morganii | DSM 30164 |
Streptococcus agalactiae | Ic | BCCM 15083 | Proteus mirabilis | DSM 4479 |
Streptococcus agalactiae | II | BCCM 15084 | Klebsiella pneumoniae | Clinical isolate |
Streptococcus agalactiae | III | BCCM 15085 | Escherichia hermannii | DSM 4560 |
Streptococcus agalactiae | IV | BCCM 15086 | Escherichia vulneris | DSM 4564 |
Streptococcus agalactiae | V | BCCM 15087 | Aeromonas hydrophila | DSM 30015 |
Streptococcus agalactiae | Ib | BCCM 15090 | Citrobacter freundii | DSM 30039 |
Streptococcus agalactiae | III | BCCM 15094 | Enterobacter cloacae | ATCC 13047 |
Streptococcus agalactiae | III | BCCM 15095 | ||
Respiratory Panel | ||||
Strep spp | Staphylococcus aureus | DSM 11965 | ||
Streptococcus dysgalactiae | DSM 6176 | Staphylococcus epidermidis | ATCC 27626 | |
Streptococcus oralis | DSM 20627 | Pseudomonas aeruginosa | ATCC 10145 | |
Streptococcus pneumoniae | DSM 11865 | Klebsiella oxytoca | DSM 5175 | |
Streptococcus parasanguinis | DSM 6778 | |||
Streptococcus intermedius | DSM 20573 | Neisseria Panel | ||
Streptococcus salivarius | DSM 20560 | Neisseria meningitidis | DSM 10036 | |
Streptococcus uberis | DSM 20569 | Neisseria lactamica | DSM 4691 | |
Streptococcus mitis | DSM 12643 | Neisseria meningitidis | ATCC 13077 | |
Enterococcus faecalis | DSM 20371 | Neisseria cinerea | DSM 4630 | |
Enterococcus faecium | DSM 20477 | |||
Streptococcus gordonii | DSM 6777 | Sepsis Panel | ||
Streptococcus mutans | DSM 20523 | Streptococcus sanguis | DSM 20567 | |
Streptococcus pyogenes | DSM 20565 | Streptococcus porcinus | DSM 20725 | |
Streptococcus anginosus | DSM 20563 | Serratia marcescens | DSM 1608 | |
Enterobacter aerogenes | DSM 30053 | |||
Genital Panel | Staphylococcus haemolyticus | DSM 20263 | ||
Acinetobacter lwoffii | DSM 2403 | Streptococcus bovis | DSM 20480 | |
Lactobacillus acidophilus | DSM 20079 | |||
Lactobacillus fermentum | DSM 20055 | |||
Mobiluncus curtisii | DSM 2711 | |||
Mobiluncus mulieris | DSM 2710 |