Skip to main content

Table 4 24-loci MIRU-VNTR codes of isolates belonging to the ST53 genotype and isolates with previously unreported spoligopatterns

From: Increased level of acute phase reactants in patients infected with modern Mycobacterium tuberculosis genotypes in Mwanza, Tanzania

   Mix 1 Mix 2 Mix 3 Mix 4 Mix 5 Mix 6 Mix 7   Mix 8  
   580 2996 802 960 1644 3192 424 577 2165 2401 3690 4156 2163b 1955 4052 154 2531 4348 2059 2687 3007 2347 2461 3171
Sample Shared-type MIRU 04 MIRU 026 MIRU 40 MIRU 10 MIRU 16 MIRU 31 VNTR 42 VNTR 43 AVNTR ETR-A VNTR 47 VNTR 52 VNTR 53 VNTR QUB11b VNTR 1955 VNTR QUB-26 MIRU 02 MIRU 23 MIRU 39 MIRU 20 MIRU 24 MIRU 27 VNTR 46 VNTR 48 VNTR 49
21 ST53 2 5 2 3 4 3 2 4 2 2 3 * 4 2 4 2 5 2 2 1 3 4 2 3
38 ST53 2 1 2 4 1 2 1 4 3 4 3 4 2 3 7 2 5 2 1 1 3 4 2 3
46 ST53 2 1 2 4 1 2 1 4 3 4 3 4 2 3 7 2 5 2 1 1 3 4 2 3
56 ST53 2 1 2 4 1 3 1 4 3 4 3 4 2 3 7 2 5 2 2 1 3 4 2 3
58 ST53 2 1 2 4 1 2 1 4 3 2 3 4 2 3 7 2 5 2 1 1 3 4 2 3
94 ST53 2 5 4 3 1 3 2 4 3 2 3 3 4 2 * 2 3 2 2 1 3 3 2 3
136 ST53 2 5 * 3 1 3 2 4 2 4 7 3 2 2 * 2 5 2 2 1 3 4 3 3
166 ST53 2 1 2 * 1 3 1 4 3 4 4 4 1 3 * 2 5 2 2 1 3 4 2 3
228 ST53 2 1 2 4 1 2 1 4 3 4 3 4 2 3 7 2 5 2 1 1 3 4 2 3
237 ST53 2 1 4 5 1 3 4 2 3 2 3 * 2 3 3 2 5 2 2 1 3 4 2 3
242 ST53 2 5 4 3 1 3 2 4 3 4 3 * 4 2 2 2 3 2 2 1 3 3 2 3
249 ST53 2 1 2 4 1 3 1 4 3 2 3 * 2 3 5 2 5 2 2 1 3 4 2 3
29 Unassigned 2 2 4 4 4 5 1 2 9 2 5 2 9 6 6 2 6 3 2 2 3 3 4 3
88 Unassigned 2 1 4 7 4 4 4 2 4 2 2 * 2 3 4 2 5 3 2 1 3 4 2 3
107 Unassigned 2 4 3 3 3 4 2 5 4 2 3 3 2 3 7 2 5 2 1 1 3 4 1 0\3
120 Unassigned 2 4 3 3 3 4 2 5 4 3 4 4 2 3 7 2 1 2 2 1 3 4 1 3
122 Unassigned 2 5 3 3 3 3 2 3 3 2 3 3 2 3 7 2 5 2 1 1 3 2 2 3
132 Unassigned 2 2 2 4 2 5 2 4 7 4 2 2 7 8 5 2 6 2 2 2 3 3 5 3
172 Unassigned 2 1\7 4 4 6 6 4 2 4   2 4 2 4 4 2 5 1 2 1 2 4 2 3
224 Unassigned 2 5 4 1 2 3 2 4 3 2 3 3 4 3 5 2 5 2 1 1 3 4 3 3
236 Unassigned 4 2 3 4 3 4 2 4 9 2 4 2 6 6 5 2 4 3 2 2 3 3 3 3
238 Unassigned 2 1 4 7 4 4 4 2 3 2 2 * 2 3 5 2 5 3 2 1 3 4 2 3
  1. Loci where a PCR product could not be produced are marked with ‘*’.