Figure 3

Graphs show bootscanning values of query sequence SDAC031 to representative sequences of subgenotypes D1 to D6 and outgroup, genotype F. Graphs were generated using Simplot version 3.5.1^© with window size: 200 bp, step size 20 bp, gap-strip off, 100 bootstrap replicates, Kimura transition/transversion ratio:2 and NEIGHBOR. Dashed vertical lines indicate breakpoints. The numbers of informative sites, which are shared by the isolate with subgenotype D4 are shown above and with subgenotype D6, below, on the right hand side of the four-member trees representing these sites. The genomic regions belonging to subgenotype D4 are shaded in grey.