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Table 3 The predicted interactors to the two tRF-5s.

From: Compartmentalized, functional role of angiogenin during spotted fever group rickettsia-induced endothelial barrier dysfunction: evidence of possible mediation by host tRNA-derived small noncoding RNAs

tRF Gene name [accession number] Base-paring to potential target sites ΔG value (Kcal/mol)
tRF5-ValGTG Homo sapiens protein kinase C, beta (PRKCB), transcript variant 1, mRNA [NM_121535.2] -34.2
Homo sapiens carboxyl ester lipase (bile salt-stimulated lipase) (CEL), mRNA [NM_001807.3] -35.3
HOMO sapiens glutamyl-tRNA synthetase 2, mitochondrial (EARS2), transcript variant 1, mRNA [NM_001083614.1] -40.2
HOMO sapiens solute carrier family 23 (nucleobase trnasporters), member 2 (SLC23A2), trnascript variant 1, mRNA [NM_005116.5] -36.9
tRF5-GlyGCC Homo sapiens long interegenic non-protein coding RNA 317 (LINC00317), non-coding RNA [NR_038872.1] -50.6
Homo sapiens SH3-domain GRB2-like endophilin B1 (SH3GLB1), transcript variant 1, mRNA [NM_016009.4] -37.3
Homo sapiens glial cells missing homolog 1 (drosophila) (GMC1), mRNA [NM_016009.4] -37.2
Homo sapiens syntrophi, beta 1 (dystrophin-asociated protein A1, 59kDa, basic component 1) (SNTB1) mRNA [NM_021021.3 -39.7
  1. The potential target mRNAs of the two tRF-5s and their interactions are summarized and tabulated. In the depicted base-pairing interactions, the sequences on the top and bottom are tRF-5 and its predicted target mRNA, respectively. The numbers of target mRNAs indicate nucleotide coordinates of the RefSeq shown in the second column. The degree of interaction, expressed in ∆ G values, was calculated by the RNAhybrid program and shown.