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Figure 6 | BMC Infectious Diseases

Figure 6

From: Inferring patient to patient transmission of Mycobacterium tuberculosisfrom whole genome sequencing data

Figure 6

Exclusion of epidemiologically linked pairs based on phylogenetic position. Red indicates primary case isolate, blue is the secondary case isolate. A: excluded pair 1. B: excluded pair 2. C: Excluded pair with SNP difference of 149. N09501026 shares a deletion with an isolate in a different study [36]. D: Example of expected phylogenetic positioning of direct transmission pairs, brackets indicate paired isolates.

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