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Table 2 Primer specificity for the Aggregatibacter actinomycetemcomitans strains

From: Quantitative discrimination of Aggregatibacter actinomycetemcomitans highly leukotoxic JP2 clone from non-JP2 clones in diagnosis of aggressive periodontitis

Strain Serotype JP2/non-JP2 Amplification with primer pair:a Primer pairs for Δ530 locus analysisb (for non-JP2) Source or reference
    JP2F3-JP2R2 NonJP2F- NonJP2R   
ATCC 29523 a non-JP2 - + 1 ATCCc
SUNYaB 75 (ATCC 43717) a non-JP2 - + 1 SUNYaBd
TN-1 a non-JP2 - + 2 Nishiharae
Y4 (ATCC 43718) b non-JP2 - + 1 Socranskyf
JP2 (HK921) b JP2 + - - Kiliang
HK 1199 b JP2 + - - Kilian
HK 1519 b JP2 + - - Kilian
HK 1611 b JP2 + - - Kilian
HK 1612 b JP2 + - - Kilian
HK 1651 b JP2 + - - Kilian
HK 1709 b non-JP2 - + 1 Kilian
ATCC 29522 b non-JP2 - + 2 ATCC
ATCC 29524 b non-JP2 - + 1 ATCC
HK 916 c non-JP2 - + 1 Kilian
SUNYaB 67 (ATCC 43719) c non-JP2 - + 1 SUNYaB
NCTC 9709 c non-JP2 - + 2 NCTCh
NCTC 9710 c non-JP2 - + none NCTC
3381 d non-JP2 - + 2 Asikaineni
IDH 781 d non-JP2 - + 2 Asikainen
OMZ 534 e non-JP2 - + 2 Gmürj
OMZ 541 e non-JP2 - + 2 Gmür
OMZ 546 e non-JP2 - + 2 Gmür
NUM 5005 f non-JP2 - + 2 Takadak
NUM 4039 g non-JP2 - + 2 Takada
  1. a +, positive amplification with a band of the expected size; -, no amplification observed.
  2. b1, Aa orfX3’F1 and Aa lktC5’R1; 2, Aa orfX3’F2 and Aa lktC5’R2 (Table 1); none, not 1 or 2s.
  3. cATCC, American Type Culture Collection, Rockville, Md.
  4. dSUNYaB, State University of New York at Buffalo, NY.
  5. eNishihara, T. Nishihara, Kyushu Dental College, Kitakyushu, Japan.
  6. fSocransky, S. Socransky, Forsyth Dental Center, Mass.
  7. gKilian, M. Kilian, University of Aarhus, Aarhus, Denmark.
  8. hNCTC, National Collection of Type Cultures, London, England.
  9. iAsikainen, S. Asikainen, University of Helsinki, Helsinki, Finland.
  10. jGmür, R. Gmür, University of Zurich, Zurich, Switzerland.
  11. kTakada, K. Takada, Nihon University School of Dentisry at Matsudo, Chiba, Japan.