From: Sequential multiplex PCR assay for determining capsular serotypes of colonizing S. pneumoniae
Name | Sequences (5' → 3') | Amplicon size |
---|---|---|
1-f | CTC TAT AGA ATG GAG TAT ATA AAC TAT GGT TA | 280 |
1-r | CCA AAG AAA ATA CTA ACA TTA TCA CAA TAT TGG C | |
3-f | ATG GTG TGA TTT CTC CTA GAT TGG AAA GTA G | 371 |
3-r | CTT CTC CAA TTG CTT ACC AAG TGC AAT AAC G | |
4-f | CTG TTA CTT GTT CTG GAC TCT CGA TAA TTG G | 430 |
4-r | GCC CAC TCC TGT TAA AAT CCT ACC CGC ATT G | |
6-f | AAT TTG TAT TTT ATT CAT GCC TAT ATC TGG | 250 |
6-f | TTA GCG GAG ATA ATT TAA AAT GAT GAC TA | |
6C-f | CAT TTT AGT GAA GTT GGC GGT GGA GTT | 727 |
6C-r | AGC TTC GAA GCC CAT ACT CTT CAA TTA | |
7C/B (40)-f | CTA TCT CAG TCA TCT ATT GTT AAA GTT TAC GAC GGG A | 260 |
7C/B (40)-r | GAA CAT AGA TGT TGA GAC ATC TTT TGT AAT TTC | |
7A/F-f | CCT ACG GGA GGA TAT AAA ATT ATT TTT GAG | 826 |
7A/F-r | CAA ATA CAC CAC TAT AGG CTG TTG AGA CTA AC | |
9A/V-f | CTT CGT TAG TTA AAA TTC TAA ATT TTT CTA AG | 753 |
9A/V-r | GTC CCA ATA CCA GTC CTT GCA ACA CAA G | |
10A-f | GGT GTA GAT TTA CCA TTA GTG TCG GCA GAC | 628 |
10A-r | GAA TTT CTT CTT TAA GAT TCG GAT ATT TCT C | |
11A/D/F-f | GGA CAT GTT CAG GTG ATT TCC CAA TAT AGT G | 463 |
11A/D/F-r | GAT TAT GAG TGT AAT TTA TTC CAA CTT CTC CC | |
12F (12A/B, 44, 46)-f | GCA ACA AAC GGC GTG AAA GTA GTT G | 376 |
12F (12A/B, 44, 46)-r | CAA GAT GAA TAT CAC TAC CAA TAA CAA AAC | |
14-f* | GAA ATG TTA CTT GGC GCA GGT GTC AGA ATT | 189 |
14-r* | GCC AAT ACT TCT TAG TCT CTC AGA TGA AT | |
15A/F-f | ATT AGT ACA GCT GCT GGA ATA TCT CTT C | 434 |
15A/F-r | GAT CTA GTG AAC GTA CTA TTC CAA AC | |
15B/C-f | TTG GAA TTT TTT AAT TAG TGG CTT ACC TA | 496 |
15B/C-r | CAT CCG CTT ATT AAT TGA AGT AAT CTG AAC C | |
16F-f | CTG TTC AGA TAG GCC ATT TAC AGC TTT AAA TC | 988 |
16F-r | CAT TCC TTT TGT ATA TAG TGC TAG TTC ATC C | |
17F-f | TTC GTG ATG ATA ATT CCA ATG ATC AAA CAA GAG | 693 |
17F-r | GAT GTA ACA AAT TTG TAG CGA CTA AGG TCT GC | |
18-f | CTT AAT AGC TCT CAT TAT TCT TTT TTT AAG CC | 573 |
18-r | TTA TCT GTA AAC CAT ATC AGC ATC TGA AAC | |
19A-f | GTT AGT CCT GTT TTA GAT TTA TTT GGT GTT GT | 478 |
19A-r | GAG CAG TCA ATA AGA TGA GAC GAT TGT TAG | |
19F-f | GTT AAG ATT GCT GAT CGA TTA ATT GAT ATC C | 304 |
19F-r | GTA ATA TGT CTT TAG GGC GTT TAT GGC GAT AG | |
22-f | GAG TAT AGC CAG ATT ATG GCA GTT TTA TTG TC | 643 |
22-r | CTC CAG CAC TTG CGC TGG AAA CAA CAG ACA AC | |
23A-f*** | TAT TCT AGC AAG TGA CGA AGA TGC G | 722 |
23A-r*** | CCA ACA TGC TTA AAA ACG CTG CTT TAC | |
23B-f** | TTG TTA GTG GTA TTA AAT TGG GGA CTA CTA GG | 216 |
23B-r** | ATA CCT ATC TGA AGT GTT ATT AAC CCA CCA AC | |
23F-f | GTA ACA GTT GCT GTA GAG GGA ATT GGC TTT TC | 384 |
23F-r | CAC AAC ACC TAA CAC TCG ATG GCT ATA TGA TTC | |
24A/F-f** | TCT CAA CCA AGA TAC AGA TTT TGA TTT TAC TC | 686 |
24A/F-r** | TAT AAA CCT TTA GTA AAC ACT CTG CTT GAT CG | |
31-f | GGA AGT TTT CAA GGA TAT GAT AGT GGT GGT GC | 701 |
31-r | CCG AAT AAT ATA TTC AAT ATA TTC CTA CTC | |
33F (33A/37)-f | GAA GGC AAT CAA TGT GAT TGT GTC GCG | 338 |
33F (33A/37)-r | CTT CAA AAT GAA GAT TAT AGT ACC CTT CTA C | |
34-f | GCT TTT GTA AGA GGA GAT TAT TTT CAC CCA AC | 408 |
34-r | CAA TCC GAC TAA GTC TTC AGT AAA AAA CTT TAC | |
35A (35C/42)-f*** | ATT ACG ACT CCT TAT GTG ACG CGC ATA | 280 |
35A (35C/42)-r*** | CCA ATC CCA AGA TAT ATG CAA CTA GGT T | |
35B-f | GAT AAG TCT GTT GTG GAG ACT TAA AAA GAA TG | 677 |
35B-r | CTT TCC AGA TAA TTA CAG GTA TTC CTG AAG CAA G | |
35F (47F)-f | GAA CAT AGT CGC TAT TGT ATT TTA TTT AAA GCA A | 517 |
35F (47F)-r | GAC TAG GAG CAT TAT TCC TAG AGC GAG TAA ACC | |
38 (25A/F)-f | CGT TCT TTT ATC TCA CTG TAT AGT ATC TTT ATG | 574 |
38 (25A/F)-r | ATG TTT GAA TTA AAG CTA ACG TAA CAA TCC | |
cpsA-f | GCA GTA CAG CAG TTT GTT GGA CTG ACC | 160 |
cpsA-r | GAA TAT TTT CAT TAT CAG TCC CAG TC |