Sequencing | REBA MTB-Rifa® assay | Sputum | Isolates | Total |
---|---|---|---|---|
533CTG-CCG | 533CTG-CCG, ∆530-534 | 8 | 8 | 16 |
531TCG-TTG | 531TCG-TTG, ∆530-534 | 59 | 115 | 174 |
531TCG-TGG | ∆530-534 | 1 | 3 | 4 |
531TCG-TGC | ∆530-534 | 1 | 1 | 2 |
531TCG-CAG | ∆530-534 | 0 | 2 | 2 |
526CAC-TAC | ∆524-529 | 4 | 14 | 18 |
526CAC-GAC | ∆524-529 | 4 | 9 | 13 |
526CAC-CTC | ∆524-529 | 2 | 4 | 6 |
526CAC-CCC | ∆524-529 | 1 | 1 | 2 |
526CAC-CGC | ∆524-529 | 1 | 2 | 3 |
526CAC-AAC | ∆524-529 | 0 | 1 | 1 |
526CAC-TGC | ∆524-529 | 0 | 3 | 3 |
526CAC-GGC | ∆524-529 | 0 | 1 | 1 |
526CAC-TCC | ∆524-529 | 0 | 1 | 1 |
522TCG-TGG | ∆520-524 | 0 | 1 | 1 |
518AAC deletion | ∆515-520 | 0 | 2 | 2 |
516GAC-GTC | 516GAC-GTC, ∆515-520 | 6 | 18 | 24 |
516GAC-TAC | ∆515-520 | 3 | 6 | 9 |
516GAC-AAC | ∆515-520 | 0 | 1 | 1 |
513-514 CAA insertion | ∆509-514 | 0 | 1 | 1 |
513-516 deletion | ∆509-514, ∆515-520 | 1 | 1 | 2 |
514TTC-ATC | ∆509-514 | 1 | 0 | 1 |
513CAA-AAA | ∆509-514 | 1 | 3 | 4 |
513CAA-CTA | ∆509-514 | 1 | 2 | 3 |
511CTG-CCG | ∆509-514 | 0 | 3 | 3 |
511CTG-CCG, 516GAC-GGC | ∆509-514, ∆515-520 | 1 | 0 | 1 |
510CAG-CAC, 511CTG-CCG | ∆509-514 | 1 | 0 | 1 |
531TCG-TTG, 516GAC-TAC | 531TCG-TTG, ∆530-534, ∆515-520 | 0 | 1 | 1 |
533CTG-CCG, 516GAC-GGC | 533CTG-CCG, ∆530-534, ∆515-520 | 0 | 2 | 2 |
526CAC-AAC, 516GAC-AAC | ∆524-529, ∆515-520 | 0 | 1 | 1 |
523GGG-GAG, 513CAA-CTA | ∆520-524, ∆509-514 | 0 | 1 | 1 |
518AAC-CAC, 516GAC-GGC | ∆515-520 | 0 | 1 | 1 |
516GAC-GGC, 515ATG-GTG | ∆515-520 | 0 | 1 | 1 |
516GAC-GTC, 513CAA-GAA | ∆515-520, ∆509-514 | 0 | 1 | 1 |
Total | 96 | 211 | 307 |