Agent | Forward primer | Reverse primer | Probe | Target gene | Ref |
---|---|---|---|---|---|
Norovirus GG2 | TGGAYTTTTAYGTGCCCAG | CGACGCCATCTTCATTCAC | AGCCAGATTGCGATCGCCC | Polymerase-capsid junction | [16] |
Rotavirusa | AACCATCTACACATGACCCTCTATGA | GGTCACATAACGCCCCTATAGC | CAATAGTTAAAAGCTAACACTGTCAAA | Non-strutural protein 3 | [17] |
AACCATCTTCACGTAACCCTCTATGA | |||||
Adenovirus | GCCACGGTGGGGTTTCTAAACTT | GCCCCAGTGGTCTTACATGCACATC | TGCACCAGACCCGGGCTCAGGTACTCCGA | Hexon | [15] |
Campylobacter jejuni | ATGCAAACCATAATTGGGTTTCAAC | CGAGTATCAGCAACTTCTTCTACAGCT | TTGCCACCAAAACCAAAACT | Fibronectin-binding protein (cadF) | [18] |
ETEC-estA | AAGCATGAATAGTAGCAATTACTGCT | TTAATAGCACCCGGTACAAGCA | AACAACACAATTCAC | Heat-stable enterotoxin | [19] |
ETEC-eltB | TCCGGCAGAGGATGGTTACA | CCAGGGTTCTTCTCTCCAAGC | AGCAGGTTTCCCACCGGATCACC | Heat-labile enterotoxin | [20] |
E. coli eae | ACATGACCGATGACAAGGCA | CGCGACTGAAGCTGGCTAC | TCGCCGCCTGTTGTGCCG | Enteroaggregative factor | [21] |
E. coli bfpA | GGTCTGTCTTTGATTGAATCTGCA | GCAGACTGGTAGTAAAACATCACACC | GCGCTTGCTGCCACCGTTACCG | Bundle-forming pilus | [22] |
Shigella spp | ACCGGCGCTCTGCTCTC | GCAATGTCCTCCAGAATTTCG | CTGGGCAGGGAAATGTTCCGCC | Invasion plasmid antigen H | [23] |
Cryptosporidium parvum/hominis | CAAATTGATACCGTTTGTCCTTCTG | TGGTGCCATACATTGTTGTCCT | TGTCCTCCTGGATTCA | Oocyst wall protein (OWP) | [24] |