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Table 2 Acquisition and clearance of Streptococcus pneumoniae carriage in a day-care centre in Portugal, 1998–1999

From: Comparative analysis of Streptococcus pneumoniaetransmission in Portuguese and Finnish day-care centres

 

Clearance

Acquisition in non-carriers

Acquisition in carriers

Target serotype

Exposure1

Events

Person-time2

Events

Person-time3

Events

Person-time4

19F

Yes

19

58

17

96

5

85

No

2

2

3

19

0

20

23F

Yes

10

23

10

47

2

54

No

1

3

2

68

1

85

6B

Yes

2

13

5

44

5

61

No

3

7

2

71

3

84

14

Yes

2

10

3

17

6

27

No

0

0

2

98

4

128

10A

Yes

2

11

1

27

1

44

No

2

2

4

88

5

108

19A

Yes

3

7

1

33

0

37

No

2

4

2

82

2

117

NT

Yes

1

5

1

44

3

52

No

1

6

1

71

3

102

16F

Yes

0

0

0

18

0

21

No

1

2

2

97

3

142

18F

Yes

1

1

1

4

0

7

No

0

0

1

111

2

157

11A

Yes

0

0

0

13

1

25

No

2

3

0

102

0

137

23B

Yes

0

0

0

6

0

4

No

1

1

1

109

0

160

9V

Yes

0

2

0

21

1

34

No

0

4

1

94

0

125

15A

Yes

0

0

0

4

0

7

No

0

1

1

111

0

157

8

Yes

0

0

0

0

0

0

No

0

0

0

115

1

165

Total:

Yes

40

130

39

374

24

458

No

15

35

22

1236

24

1687

55

165

78

1610

48

2145

  1. The crude estimates of the model parameters are (cf. Appendix): the transmission rate β ^ = 39 κ ^ × 374 / 60.18 = 0.54 (per month); the community acquisition rate per serotype (in non-carrying children) κ ^ = 22 / 1236 = 0.018 (per month); the clearance rate of carriage μ ^ = 55 / 165 = 0.33 (per month); the competition parameter ϕ ^ = 24 / 1687 / 22 / 1236 = 0.80 . For parameter β, the denominator (60.18) is not directly readable from the data as presented in the table. Only samples available from two consecutive visits were considered, accounting for 67% of the scheduled pairs of consecutive visits. The three rooms were analysed as six rooms, separated by the summer break.
  2. 1 Exposure is here defined as the presence of at least one carrier of the target serotype in the other attendees in the room.
  3. 2 Person-time here is the total time, in months, spent carrying pneumococcus overall (total row) or a specific serotype (serotype rows) stratified by the presence or absence of other carriers of the specific serotype.
  4. 3 Person-time here is the total time, in months, spent as a non-carrier, stratified by exposure to the specific serotype. For the total row, the time is a sum of serotype-specific person-times.
  5. 4 As in 2 but for children carrying pneumococcus.