Primer | Sequence (5' - 3') | Product size | Position in coding sequence | Reference |
---|---|---|---|---|
erm(A)-F | CCCGAAAAATACGCAAAATTTCAT | 590 | 15-38 | [23] |
erm(A)-R | CCCTGTTTACCCATTTATAAACG | Â | 604-582 | Â |
erm(B)-F | TGGTATTCCAAATGCGTAATG | 745 | 203-183 | Â |
erm(B)-R | CTGTGGTATGGCGGGTAAGT | Â | 541-522 | Â |
mef(A)-F* | CAATATGGGCAGGGCAAG | 317 | 38-55 | Â |
mef(A)-R* | AAGCTGTTCCAATGCTACGG | Â | 352-333 | Â |
tet(M)-F | GTGGACAAAGGTACAACGAG | 406 | 106-125 | Â |
tet(M)-R | CGGTAAAGTTCGTCACACAC | Â | 511-492 | Â |
tet(O)- F | AACTTAGGCATTCTGGCTCAC | 515 | 13-43 | Â |
tet(O)- R | TCCCACTGTTCCATATCGTCA | Â | 527-507 | Â |
tet(K)-F | GATCAATTGTAGCTTTAGGTGAAGG | 155 | 344-368 | Â |
tet(K)-R | TTTTGTTGATTTACCAGGTACCATT | Â | 498-474 | Â |
tet(L)-F | TGGTGGAATGATAGCCCATT | 229 | 384-403 | Â |
tet(L)-R | CAGGAATGACAGCACGCTAA | Â | 612-593 | Â |
16S-rDNA-F | GAGTACGACCGCAAGGTTGA | 100 | 886-905 | Â |
16S-rDNA -R | CTGGTAAGGTTCTTCGCGTTG | Â | 985-964 | Â |
ss-Tn916-1 | GCCATGACCTATCTTATA | 476 | 16083-16100 | [24] |
ss-Tn916-2 | CTAGATTGCGTCCAA | Â | 16559-16545 | Â |
tet(32)For | GAACCAGATGCTGCTCTT | 620 | 619-637 | [28] |
Tet(32)Rev | CATAGCCACGCCCACATGAT | Â | 1239-1220 | Â |
SScps2J-F | CAAACGCAAGGAATTACGGTATC | 236 | 209-231 | |
SScps2J-R | CATTTCCTAAGTCTCGCACC | Â | 445-426 | Â |
tet(L)Ng-F | TCGTTAGCGTGCTGTCATTC | 698 | 680-700 | [31] |
tet(L)-R-pDG364 | CTTAGAAATCCCTTTGAGAAT | Â | 1378-1358 | This study |
tet(W)- F | TTGGAATTCTTGCCCATGTAGACGC | 1872 | 18-42 | This study |
tet(W)- R | TTGTCCAGGCGGTTGTTTGGAC | Â | 1889-1868 | Â |
tet(W)-F-HN | GGTGCAGTTGGAGGTTGTTT | 410 | 1179-1198 | Â |
tet(W)-R-HN | CCTTCAATGCCTGTTCCAAT | Â | 1569-1588 | Â |
tet(O)-F-pDG364 | ATGAAAATAATTAACTTAGG | 1920 | 1-19 | Â |
tet(O)-R-pDG364 | TTAAGCTAACTTGTGGAACA | Â | 1920-1901 | Â |
ss-tet(M)-whole-F | ACAGACAAAGAACTATCCTTAATG | 2500 | 419-396 | Â |
ss-tet(M)-whole-R | GTACCCAGTTTAAGAATACCTTTATC | Â | 161-136 | Â |
Additional primers used for sequencing | ||||
tet(O)-2-F | TTCAAGACGCCTCCCTGTTC | Â | 679-698 | This study |
tet(O)-2-R | ATTTGGCGGGACTTCTATGTGG | Â | 1318-1296 | Â |
ss-tet(M)-Fseq1 | GTTAAATCACTACGATAT | Â | 1763-1745 | Â |
ss-tet(M)-Rseq1 | ATAGTGTTCTTGGAGATA | Â | 906-929 | Â |
ss-tet(M)-Fseq2 | GTATAATTTCATGTGTCG | Â | 1162-1144 | Â |
ss-tet(M)-Rseq2 | AGATGGCGTACAAGCACA | Â | 305-323 | Â |
ss-PAI-P8-tet(M)-R | GCCCTTTTGGGTTTTTGAAT | Â | -33- -14 | Â |
ss-PAItetM-P9over F | GGGAATCCCCATTTTCCTAA | Â | 366-347 | Â |