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Table 3 Sequence types, virulence genes and plasmids of 20 fluoroquinolone resistant E. coli isolates

From: Fluoroquinolone resistance among fecal extended spectrum βeta lactamases positive Enterobacterales isolates from children in Dar es Salaam, Tanzania

Isolate ID

ST

Virulence genes

Plasmids

β-lactam resistance genes

1185

617

fyu, gadA, iucC, iutA, terC,traT, irp2, iss, capU

IncFII, IncFIA,IncFIB(AP001918)

blaCTX-M-15, blaOXA-1

2163

617

fyu, gadA, iucC, iutA, terC,traT, irp2, iss

IncFII,InFIA, IncFIB(AP001918)

blaCTX-M-15

415

617

fyu, gadA, iucC, iutA, terC,traT, irp2, iss

IncFII, IncFIA, IncFIB(AP001918)

blaCTX-M-15, blaOXA-1

2124

617

fyu, gad, terC, traT, irp2, iss, capU

IncY, IncFIA, IncFII

blaCTX-M-15, blaTEM-1B, blaOXA-1

1476

617

fyu, iucC, iutA, terC,traT, iss, capU

IncFII, IncFIA, IncFIB(AP001918), Col8282

blaCTX-M-15

1779

131

fyu, gad, iucC, iutA, terC, traT, irp2, iss, chuA, kpSE,usp, kpSMII_K5, ompT,pap_F13,papC,sitA,ORF3,ORF4,aap,aar,aatA,afaD,agg3C,agg3D,agg5A,aggR,caf1

IncQ1, IncFII(pRSB107)

blaTEM-1B

1520

131

fyu, gad, iha, iucC, iutA, terC, traT, iss, afaA, afaC, afaD, astA, chuA, hrA, kpSE, kpSMIIK5, nfaE, ompT, pap_F43, papC,sat, senB, sitA, usp, yfcV

IncFII(prSB107),IncFIB(AP001918),

blaCTX-M-15, blaTEM-1B,blaOXA-1

451

131

fyu, gad, iha, iucC, iutA, terC, traT, irp2, iss, afaA, afaC, afaD, astA, chuA, hrA, kpSE, kpSMII_K1, kpSMII_K5, nfaE, ompT, pap_F19, pap_F43, papC, sat, senB, sitA, usp, yfcV

IncFII(pRSB107), IncFIA,

blaCTX-M-15, blaTEM-1B, blaOXA-1

IncFIB(AP001918),

822

131

fyu, gad, iha, iucC, iutA, terC, traT, irp2, iss, afaA, afaC, afaD, astA, chuA, hrA, kpSE, kpSMII_K1,kpSMII_K5, nfaE, ompT,pap_F19, pap_F43, papC, sat, senB, sitA, usp, yfcV

IncFII(pRSB107),IncFIA,

blaCTX-M-15, blaTEM-1B, blaOXA-1

IncFIB(AP001918),Col156

1253

131

fyu, iha, iucC, iutA, terC, traT, irp2, iss, chuA, kpSE,kpSMII_K5, ompT, pap_F43, sat, senB, sitA, usp, yfcV

IncFII(pRSB107),IncFIA,

blaCTX-M-27

IncFIB(AP001918),Col156

2130

1193

fyuA, gad, iha, iucC, iutA, terC, irp2, chuA, kpsE, kpsMII_K1, ompT, sat, senB, sitA, yfcV, vat, neuC

IncQ1,IncFIA,IncFIB(AP001918),

blaCTX-M-15

2240

1193

fyuA, gad, iha, iucC, iutA, terC, irp2, chuA, kpsE, kpsMII_K1, ompT, papA_F43, sat, sen B, sitA, yfcV, vat, neuC

IncQ1,IncFIA,IncFIB(AP001918),Col156, Col(BS512)

blaCTX-M-15, blaOXA-1

2258

1193

fyuA, gad, iha, iucC, iutA, terC, irp2, chuA,kpsE, kpsMII_K1, ompT, papA_F43, sat, sen B, sitA, yfcV, vat, neuC, cib

IncQ1, IncFIB(AP001918),Incl1,Col(BS512), Col156

blaCTX-M-15, blaOXA-1

1448

167

gad, terC, traT, iss, hrA, capU

IncFII,IncFIA,Col440I, Col(BS512)

blaCTX-M-15, blaTEM-1B, blaOXA-1,

1637

167

gad, terC, traT, iss, hrA

IncFII, IncFIA, Col440I, Col(BS512)

blaCTXM-15, blaTEM-1B, blaOXA-1, blaNDM-5

868

4981

fyuA, gad, terC, traT, irp2, iss

IncFII, IncFIA,IncFIB(AP001918)

blaCTX-M-15

2171

410

gad, terC, IpfA

IncQ1,IncFIB(AP001918),IncFII(pAMA1167-NDM-5),Col(BS512)

blaCTX-M-15, blaTEM-1B, blaOXA-1, blaCMY-2

453

155

gad, iroN, iucC, iutA, terC, traT, iss, cvaC, etsC, hlyF, IpfA, mchF, tsh

IncFIC(FII),IncFIA,IncFIB(AP001918)

blaTEM-1B

132

34

espA, espl, fyuA, gad, iha, iroN, iucC, iutA, terC, tir, traT

IncFII(pCoo), IncY, IncHI2, IncHI2A

blaCTX-M-15, blaTEM-1B, blaACT-7

407

10

fyuA, gad, iucC, iutA,terC, traT, irp2

IncFIA, IncFII(pAMA1167-NDM-5)

blaCTX-M-14, blaCTX-M-24, blaOXA-1