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Table 9 Extended genotypic prediction of the SCCmec type by 1928 platform among the 255 isolates

From: Benchmarking of two bioinformatic workflows for the analysis of whole-genome sequenced Staphylococcus aureus collected from patients with suspected sepsis

S. aureus isolate

ST  

Sccmec type

IS1272

ccrA1

ccrA2

ccrA3

ccrA4

ccrB1

ccrB2

ccrB3

ccrB4

ccrB6

ccrC

mecA

mecC

INH

1928

SA 606

375

375

IV

✓

 

✓

   

✓

    

✓

 

SA 1857

30

30

IV

✓

 

✓

   

✓

    

✓

 

SA 1153

5

5

V/VII

          

✓

✓

 

SA 1197

130

130

XI

 

✓

     

✓

    

✓

SA 1637

ND

ND

Unknown

✓

            

SA 112

398

398

Unknown

✓

            

SA 1725

22

22

Unknown

✓

            

SA 1752

5

5

Unknown

    

✓

   

✓

    

SA 1828

ND

ND

Unknown

  

✓

   

✓

      

SA 1896

34

34

Unknown

 

✓

     

✓

     

SA 998

5

5

Unknown

✓

            

SA 215

5

5

Unknown

✓

            

SA 261

1

1

Unknown

✓

            

SA 365

182

182

Unknown

  

✓

   

✓

      

SA 1162

1

1

Unknown

 

✓

   

✓

       

SA 535

1

1

Unknown

 

✓

   

✓

       

SA 846

1

1

Unknown

 

✓

   

✓

       
  1. ND: ST profile could not be determined