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Table 2 Nucleotide sequence similarity of strains closely related to Guangzhou strains

From: Genetic characterization of two G8P[8] rotavirus strains isolated in Guangzhou, China, in 2020/21: evidence of genome reassortment

Strain (genotype representative from study/country)

Genotype constellations and nucleotide identities (%), by genea, c

VP1

VP2

VP3

VP4

VP6

VP7

NSP1

NSP2

NSP3

NSP4

NSP5/6

Overall similarity

Human/THA/SSKT-269/2014/G8P[8]

86.07

98.80

98.30

98.05

96.83

99.80

98.85

86.69

98.41

91.01

91.91

94.97

 

86.00

98.84

98.38

98.13

96.83

99.61

98.53

86.78

98.41

90.57

91.79

94.92

Human/THA/SSL-55/2014/G8P[8]

85.94

98.58

98.49

98.05

96.83

99.06

98.79

86.62

98.31

91.22

97.06

95.21

 

85.88

98.62

98.57

98.09

96.83

98.87

98.47

86.71

98.31

90.69

96.94

95.17

Human/THA/SKT-457/2014/G8P[8]

85.90

98.80

98.11

98.13

94.10

98.78

98.08

86.59

98.03

90.15

90.44

94.47

 

85.90

98.80

98.11

98.13

94.10

98.78

98.08

86.59

98.03

90.15

90.44

94.47

Human/THA/PCB-85/2013/G8P[8]

85.93

98.95

98.65

98.22

91.30

99.06

98.98

86.69

98.41

93.87

97.55

94.96

 

85.87

98.99

98.73

98.30

91.15

98.87

98.66

86.78

98.41

93.34

97.43

94.91

Human/JPN/17287/2019/G8P[8]

86.04

98.62

98.07

98.01

96.83

98.78

98.79

86.12

98.03

90.55

94.85

94.90

 

85.97

98.65

98.15

98.09

96.68

98.59

98.47

86.21

98.22

90.01

94.73

94.85

Human/JPN/SO1162/2017/G8P[8]

93.32

98.20

96.91

97.67

95.65

92.84

97.89

85.58

95.59

75.53

94.36

94.65

 

93.16

98.24

96.99

97.67

95.50

92.66

97.57

85.67

95.78

75.40

94.24

94.60

Human/KOR/CAU17L-79/2017/G8P[8]

85.67

97.80

96.60

97.97

92.70

99.15

95.60

82.47

95.59

90.43

94.73

93.72

 

85.61

97.84

96.68

98.05

92.55

98.96

95.53

82.56

95.78

89.89

94.61

93.70

Human/SGP/NV-16-124/2016/G8P[8]b

92.82

79.58

93.05

96.19

89.97

90.68

93.94

82.75

62.20

84.57

59.19

87.30

 

92.67

79.61

93.13

96.27

89.82

90.49

93.62

82.75

62.29

84.04

59.07

87.23

Human/THA/DBM2018-105/2018/G2P[4]

99.57

–

–

–

–

–

–

–

–

–

–

–

 

99.48

–

–

–

–

–

–

–

–

–

–

–

Human/THA/DBM2017-203/2017/G9P[8]

–

99.51

–

–

–

–

–

–

–

–

–

–

 

–

99.55

–

–

–

–

–

–

–

–

–

–

Human/ESP/SS61921417/2015/G3P[8]

–

–

99.50

–

–

–

–

–

–

–

–

–

 

–

–

99.50

–

–

–

–

–

–

–

–

–

Human/THA/DBM2018-291/2018/G9P[8]

–

–

–

99.45

–

–

–

–

–

–

99.75

–

 

–

–

–

99.53

–

–

–

–

–

–

99.63

–

Human/ESP/SS96217158/2015/G3P[8]

–

–

–

–

–

–

99.62

–

–

–

–

–

 

–

–

–

–

–

–

99.30

–

–

–

–

–

Human/THA/DBM2017-016/2017/G9P[8]

–

–

–

–

99.48

–

–

–

–

–

–

–

 

–

–

–

–

99.48

–

–

–

–

–

–

–

Human/ESP/SS61720845/2015/G3P[8]

–

–

–

–

–

–

–

99.43

99.06

99.45

–

–

 

–

–

–

–

–

–

–

99.53

99.06

98.91

–

–

Human/THA/SSKT-269/2014/G8P[8]

–

–

–

–

–

99.34

–

–

–

–

–

–

 

–

–

–

–

–

99.15

–

–

–

–

–

–

  1. GenBank accession numbers used in this comparison were as follows: for SSKT-269, LC169951 (VP1), LC169952 (VP2), LC169953 (VP3), LC169954 (VP4), LC169955. (VP6), LC169956 (VP7), LC169957 (NSP1), LC169958 (NSP2), LC169959 (NSP3), LC169960 (NSP4), and LC169961 (NSP5/6); for SSL-55, LC169962 (VP1), LC169963 (VP2), LC169964 (VP3), LC169965 (VP4), LC169966 (VP6), LC169967 (VP7), LC169968 (NSP1), LC169969 (NSP2), LC169970 (NSP3), LC169971 (NSP4), and LC169972 (NSP5/6); for SKT-457, LC169940 (VP1), LC169941 (VP2), LC169942 (VP3), LC169943 (VP4), LC169944 (VP6), LC169945 (VP7), LC169946 (NSP1), LC169947 (NSP2), LC169948 (NSP3), LC169949 (NSP4), and LC169950 (NSP5/6); for PCB-85, LC169874 (VP1), LC169875 (VP2), LC169876 (VP3), LC169877 (VP4), LC169878 (VP6), LC169879 (VP7), LC169880 (NSP1), LC169881 (NSP2), LC169882 (NSP3), LC169883 (NSP4), and LC169884 (NSP5/6); for 17287, MT410495 (VP1), MT410496 (VP2), MT410497 (VP3), MT410498 (VP4), MT410499 (VP6), MT410500 (VP7), MT410490 (NSP1), MT410491 (NSP2), MT410492 (NSP3), MT410493 (NSP4), and MT410494 (NSP5/6); for SO1162, LC386065 (VP1), LC386066 (VP2), LC386067 (VP3), LC386068 (VP4), LC386069 (VP6), LC386070 (VP7), LC386071 (NSP1), LC386072 (NSP2), LC386073 (NSP3), LC386074 (NSP4), and LC386075 (NSP5/6); for CAU17L-79, MN058735 (VP1), MN058736 (VP2), MN058737 (VP3), MN058738 (VP4), MN058739 (VP6), MN058740 (VP7), MN058730 (NSP1), MN058731 (NSP2), MN058732 (NSP3), MN058733 (NSP4), and MN058734 (NSP5/6); for NV-16-124, G996057 (VP1), MG996065 (VP2), MG996073 (VP3), MG996081 (VP4), MG996089 (VP6), MG996097 (VP7), MG996105 (NSP1), MG996113 (NSP2), MG996121 (NSP3), MG996129 (NSP4), and MG996137 (NSP5/6); for DBM2018-105, LC514525 (VP1); for DBM2017-203, LC514482 (VP2); for SS61921417, KU550277 (VP3); for DBM2018-291, LC514495 (VP4), LC514502 (NSP5/6); for SS96217158, KU550302 (NSP1); for DBM2017-016, LC514474 (VP6); for SS61720845, KU550305 (NSP2), KU550311 (NSP3), KU550317 (NSP4); for SSKT-269, LC169956 (VP7)
  2. aBold indicates nucleotide identities >98.0%
  3. bPercent identity based on partial available gene sequences
  4. cNumbers indicate percent of nt identity between the genes of strains GZ-0005 (upper number) and GZ-0013 (lower number) and cogent genes of closest strains