Table 2 Spoligotype, SITs and lineages of Mycobacterium tuberculosis isolates from Veracruz City, Mexico

Indo-Oceanic (L1.2)

19

EAI2-Manila

10 (5%)

4/1

677,777,477,413,771

SGP. JAM, SAU, SWE, TWN. TUN, USA, JPN, GBR, PHL, ITA, AUT, THA, BEL, CZE, ARG, FRA, MEX,

NUE, GUE, SAN, JAL, EDO, VER

[8, 9, 15, 17]

3277

EAI2-Manila

1 (0.5)

–

777,777,477,513,771

MEX

VER

[14]

–

EAI2-Manila

2 (1)

677,177,477,403,771

–

VER

–

–

EAI2-Manila*

2 (1)

1/1

037,777,477,413,771

–

VER

–

–

EAI2-Manila*

1 (0.5)

–

637,057,476,013,061

–

VER

–

–

EAI2-Manila*

1 (0.5)

–

777,777,477,417,771

–

VER

–

–

EAI3-IND*

1 (0.5)

–

437,776,774,010,000

–

VER

–

East Asian (L2.2)

1

Beijing

3 (1.4)

1/1

000,000,000,003,771

FRA, POL, ARG, CUB, USA, BRA, VEN, KAZ, RUS, MEX

NUE, SAN, EDO, BAJ, VER, JAL

[10, 17]

–

MANU2*

1(0.5)

1/1

102,276,416,563,771

–

VER

–

–

MANU3*

1 (0.5)

–

702,376,717,770,771

–

VER

–

–

MANU3*

1 (0.5)

1/1

776,377,677,770,771

–

VER

–

Euro American, X (L4.1.1- 4.1.1.3)

92

X3

3 (1.4)

-

700,076,777,760,771

BRA, MEX, DNK, ARG, HND, ZAF,TWN, NLD, TUN, AUS, USA, BRA, CUB, NZL, ZWE, IND, NLD, PER, JPN, PRY, ITA, ESP, ESP, AUT, MOZ,GNB, RUS

NUE, GUE, JAL, TAM, VER, BAJ

[8, 10, 12, 15,16,17]

119

X1

8 (4)

3/3

777,776,777,760,771

BRA, FRA, MEX, JAM, SUR, TTO, SAU, ALB, ZAF, DOM, TUN, USA, GRC, IND, BRA, NLD, CAN, LVA, COL, ITA

NUE, JAL, EDO, TAM, YUC, SIN, VER

[8, 10, 11, 15]

3278

X3

4 (2.5)

4/4

700,076,717,760,771

ESP, MEX

VER*

[17]

1756

X3

1 (0.5)

–

700,022,777,760,771

PRT, USA

VER

–

–

X1

1 (0.5)

–

777,176,777,760,771

–

VER

–

–

X1*

1 (0.5)

–

177,576,777,760,771

–

VER

–

–

X1*

1 (0.5)

–

753,014,777,760,331

–

VER

–

–

X2*

2 (1)

–

777,356,376,020,601

–

VER

–

–

X3*

1 (0.5)

–

700,014,774,020,771

–

VER

–

–

X3*

1 (0.5)

–

400,037,774,060,771

–

VER

–

–

X3*

1 (0.5)

1/1

700,076,703,760,771

–

VER

–

–

X3*

1 (0.5)

–

702,077,717,770,770

–

VER

–

Euro American, Haarlem (4.1.2)

2

H2

7 (3.4)

1/0

000,000,001,020,771

USA, FRA, BRA, NLD, ITA, ZAF, IND, SWE, TUR, GMB, MEX

NUE, GUE, SAN, JAL,VER

[9, 12, 15,16,17]

3

H3

5 (1.6)

–

000,000,007,729,771

FRA, MEX, ETH, ARG, USA, CUB, COL, BRA, ITA, VEN

NUE, BAJ, JAL, VER

[8, 17]

46

H/U

3 (1.4)

–

777,777,770,000,000

DNK, SAU, POL, ARG, DEU, BRA, PAN, PAN, IDN, MEX, BRA, FRA, PER, TUR, ITA, ESP, CZE, ZAF, FIN, ITA, RUS

NUE, GUE, EDO, VER

[8, 9]

47

H1

1 (0.5)

–

777,777,774,020,771

BRA, FRA, MEX, DEU, BEL, MAR, PRT, JAM, SUR, POL, BGR, RUS, ETH, ARG, NLD, TUN, AUT, ITA, USA, CUB, SWE, ESP, GNB, NLD

NUE, GUE, JAL, GUA, BAJ, SIN, VER

[9, 16, 17]

50

H3

18 (9)

6/3

777,777,777,720,771

FRA, MEX, DEU, BEL, POL, RUS, ITA, DNK, TUR, BRA, ARG, DOM, AUT, USA, CUB, ESP, JPN, COL, PAN

NUE, GUE, SAN, JAL, EDO, BAJ, COL, PUE, VER

[8, 9, 15,16,17]

602

H1

1 (0.5)

1/1

777,777,770,000,771

BRA, BEL, MAR, POL, RUS, TUR, DEU, USA, ESP, NZL, GEO, USA, ALB

VER*

[17]

450

H1

1 (0.5)

–

777,776,770,000,000

CMR, SWE, USA, MEX, PER, ITA, PRT, JAM, SUR, TTO, POL, KAZ,

NUE, BAJ, CDM, VER

[8, 17]

472

H3

1 (0.5)

–

377,777,777,720,771

BRA, BEL, CZE, USA, ESP, NLD, FRA

–

–

571

H1

1 (0.5)

–

777,775,774,020,771

USA

–

–

602

H1

1 (0.5)

–

777,777,770,000,771

BEL,POL,BGR,MAR,SAU,NLD,USA, TUR,NZL,BRA,IRN,ITA,ZAF,GEO

–

–

849

H3

1 (0.5)

–

637,777,777,720,771

SEN, DEU, CAMR, USA, PER, GMB, ITA

–

–

948

H3

1 (0.5)

1/1

777,777,760,020,611

USA, MEX, ITA, ESP, PER

–

–

1539

H3

2 (1)

1/1

773,777,777,720,771

MAR, ESP, MYS, MOZ

CDMX

–

–

H3*

1 (0.5)

1/1

777,350,376,020,671

–

VER

–

–

H1*

2 (1)

–

776,067,770,000,731

–

VER

–

–

H1*

2 (1)

–

776,377,760,000,731

–

VER

–

–

H1*

3 (1.4)

–

777,156,340,020,601

–

VER

–

–

H1*

3 (1.4)

–

777,377,770,000,000

–

VER

–

–

H1*

2 (1)

–

777,637,774,120,731

–

VER

–

–

H2*

2 (1)

–

000,002,004,020,771

–

VER

–

–

H3*

1 (0.5)

–

772,777,774,500,600

–

VER

–

–

H3*

2 (1)

–

777,677,777,720,671

–

VER

–

Euro-American, TUR (4.2.2)

41

Turkey

2 (1)

1/1

777,777,404,720,571

DEU,BEL,DNL,TUR,SAU,ETH,SWE,ROU,NLD, ITA, SAF,BGR

–

–

Euro-American, LAM (4.3)

33

LAM3

4 (2)

2/2

776,177,607,760,771

BRA, FRA, BEL, ZAF, MAR, PRT, VEN, ITA, SAU, ARG, HND, ITA.USA, CUB.ESP, NLD, COL, PAN, NLD, PER, GMB, MOZ

NUE, GUE, SAN, JAL, SIN, VER

[8,9,10, 12, 17]

42

LAM9

15 (7)

8/5

777,777,607,760,771

BRA, IND, FRA, MEX, BEL,, VEN, RUS, POL, ARG, HND, SWE, ITA, USA, CUB, TUR, ESP, COL, PAN, HTI, GNB, ZWE, TUR, BEL

NUE, GUE, JAL, EDO, BAJ, TAM, SIN, GUA, CHI, VER

[8, 9, 11, 12, 15, 16]

130

LAM

1 (0.5)

–

776,177,607,760,731

BRA,MEX,ZAF,HND,PER,ESP,USA,COL,VEN,ITA

–

–

376

LAM3

2 (1)

1/1

376,177,607,760,771

BEL, JAM.HND, USA, ESP, BRA, ZAF, VEN

–

–

398

LAM4

1 (0.5)

1/1

777,777,607,760,631

BRA, CUB.USA, MEX, AUT, BEL, FRA

NUE, GUE, GUA, VER

[9, 17]

1076

LAM1

1 (0.5)

–

007,777,607,760,771

RUS, MOZ, BRA, IDN

–

–

1535

LAM9

1 (0.5)

–

777,577,607,760,771

BRA, BEL, ARG, ESP, USA, FRA

–

–

1718

LAM1

1 (0.5)

–

677,776,607,760,771

BRA, VEN

–

–

2350

LAM3

4 (2)

2/1

700,017,607,760,771

USA

–

–

–

LAM11-ZWE*

2 (1)

1/1

677,037,606,000,031

–

VER

–

–

LAM*

1 (0.5)

–

731,777,607,760,771

–

VER

–

–

LAM1*

1 (0.5)

–

037,777,607,760,770

–

VER

–

–

LAM3 *

1 (0.5)

–

674,037,607,760,771

–

VER

–

–

LAM3*

1 (0.5)

–

770,017,607,760,771

–

VER

–

Euro-American, S (L4.4)

707

S

2 (1)

–

736,377,777,760,771

ARG, NLD, ESP, IDN

VER*

[17]

–

S*

1 (0.5)

–

666,017,777,760,771

–

VER

–

–

S*

1 (0.5)

–

770,077,770,700,731

–

VER

–

Euro-American, T (L4.7-4.8)

37

T3

3 (1)

–

777,737,777,760,771

FRA, DEU, BEL,, VEN, POL, RUS, LBY, DNK, SAU, ETH, BRA, SWE, SWE, ESP, USA, TUR, COL, GBR, YEM, IND, NLD, ITA, ZAF, BRA, JPN, DEU, CZE, AUT, MOZ, ZAF, BEL, CHN, ETH, ITA, IRQ

SAN, VER

[12, 17]

51

T1

1 (0.5)

1/0

777,777,777,760,700

BRA, VEN, ITA, ARG, ESP, USA, GLP, FRA, PER, JPN, AUT, CHIN, IRN

GUE, JAL, EDO, VER

?

53

T1

17 (8)

2/2

777,777,777,760,771

BRA, FRA, MEX, DEU, BEL, MAR, GUY, JAM, POL, RUS, ITA, LBY, DNK, ARG, HND, ZAF, SWE, DOM, TZA.TUN, PER, USA, IRN, CUB, TUR, ESP

NUE, GUE, SAN, JAL, EDO, BAJ, OAX, SIN, GUA, VER

[8, 9, 12, 15]

58

T2

1 (0.5)

1/1

000,000,177,760,771

MEX, USA

BAJ

[13]

239

T2

3 (2)

1/1

777,777,777,760,031

MEX, BRA, VEN, USA, VEN, PER, BGD,

NUE, SAN, GUE, VER

[8, 9, 12, 17]

244

T1

7 (3.4)

1/0

777,777,777,760,601

BRA, IND, BEL, PRT, HTI, BGD, GNB, BRA, NLD, ZAF, FRA, GNB, ITA

VER*

[17]

334

T1

1 (0.5)

–

577,777,777,760,771

IND, BEL, KAZ, SWE, TUN, SEN, CHN, GBR, GUF, ITA, ZAF, GEO, ESO, MEX, CHN, GNB, FRA,

VER*

[17]

2900

T1

1 (0.5)

–

777,777,763,760,771

RUS, TUR, ALB, ITA, NGA, RUS

–

–

1123

T1-RUS2*

1 (0.5)

–

770,000,777,740,171

BEL, AUS, USA,

–

–

–

T*

1 (0.5)

–

637,017,763,660,771

–

VER

–

–

T*

1 (0.5)

–

677,775,777,760,771

–

VER

–

–

T*

1 (0.5)

–

771,057,777,760,671

–

VER

–

–

T*

1 (0.5)

–

777,177,737,760,771

–

VER

–

–

T1*

1 (0.5)

1/1

770,077,777,760,771

–

VER

–

–

T1*

1 (0.5)

–

777,357,777,760,671

–

VER

–

–

T2*

1 (0.5)

–

777,777,675,760,031

–

VER

–

–

T1-RUS2 *

1 (0.5)

–

402,202,777,720,771

–

VER

–

–

T1RUS2*

1 (0.5)

1/1

710,007,747,720,771

–

VER

–

–

T1RUS2*

1 (0.5)

–

771,000,677,720,771

–

VER

–

–

T1RUS2*

1 (0.5)

1/1

771,040,377,760,771

–

VER

–

–

T3*

1 (0.5)

–

311,077,777,760,661

–

VER

–

Euro- American, T (L4.9)

451

H37Rv

1 (0.5)

–/–

777,777,477,760,771

MAR, PRT, SAU, ARG, SWE, FRA, TUN, USA, GBR, EGY, NLD, BRA, MEX, VEN, MDG, MMR, BGR,

JAL, VER

[15, 17]